Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626821_s_at:

>probe:Drosophila_2:1626821_s_at:399:253; Interrogation_Position=1889; Antisense; CAACGTAAAGCAGTCCGTGGAGCAG
>probe:Drosophila_2:1626821_s_at:554:195; Interrogation_Position=1890; Antisense; AACGTAAAGCAGTCCGTGGAGCAGG
>probe:Drosophila_2:1626821_s_at:640:347; Interrogation_Position=1910; Antisense; GCAGGCGCCCGCTGGCAAACTGGAC
>probe:Drosophila_2:1626821_s_at:18:323; Interrogation_Position=1914; Antisense; GCGCCCGCTGGCAAACTGGACGAGG
>probe:Drosophila_2:1626821_s_at:380:557; Interrogation_Position=1958; Antisense; GGACAAGTGCAACGAAACTATTCGA
>probe:Drosophila_2:1626821_s_at:220:509; Interrogation_Position=1964; Antisense; GTGCAACGAAACTATTCGATGGCTG
>probe:Drosophila_2:1626821_s_at:100:359; Interrogation_Position=1966; Antisense; GCAACGAAACTATTCGATGGCTGGA
>probe:Drosophila_2:1626821_s_at:48:297; Interrogation_Position=1970; Antisense; CGAAACTATTCGATGGCTGGACAGC
>probe:Drosophila_2:1626821_s_at:430:389; Interrogation_Position=1971; Antisense; GAAACTATTCGATGGCTGGACAGCA
>probe:Drosophila_2:1626821_s_at:211:179; Interrogation_Position=1972; Antisense; AAACTATTCGATGGCTGGACAGCAA
>probe:Drosophila_2:1626821_s_at:537:535; Interrogation_Position=2103; Antisense; GGTCCGGGAGCCAACTGTGGCCAAC
>probe:Drosophila_2:1626821_s_at:223:631; Interrogation_Position=2105; Antisense; TCCGGGAGCCAACTGTGGCCAACAG
>probe:Drosophila_2:1626821_s_at:114:555; Interrogation_Position=2109; Antisense; GGAGCCAACTGTGGCCAACAGGCCG
>probe:Drosophila_2:1626821_s_at:707:153; Interrogation_Position=2126; Antisense; ACAGGCCGGAGGATTTGGCGGCTAC

Paste this into a BLAST search page for me
CAACGTAAAGCAGTCCGTGGAGCAGAACGTAAAGCAGTCCGTGGAGCAGGGCAGGCGCCCGCTGGCAAACTGGACGCGCCCGCTGGCAAACTGGACGAGGGGACAAGTGCAACGAAACTATTCGAGTGCAACGAAACTATTCGATGGCTGGCAACGAAACTATTCGATGGCTGGACGAAACTATTCGATGGCTGGACAGCGAAACTATTCGATGGCTGGACAGCAAAACTATTCGATGGCTGGACAGCAAGGTCCGGGAGCCAACTGTGGCCAACTCCGGGAGCCAACTGTGGCCAACAGGGAGCCAACTGTGGCCAACAGGCCGACAGGCCGGAGGATTTGGCGGCTAC

Full Affymetrix probeset data:

Annotations for 1626821_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime