FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626837_a_at:

>probe:Drosophila_2:1626837_a_at:165:645; Interrogation_Position=2629; Antisense; TAAAAGTTATCTGAACCCACGCTAA
>probe:Drosophila_2:1626837_a_at:485:381; Interrogation_Position=2641; Antisense; GAACCCACGCTAACAGATGAAATCA
>probe:Drosophila_2:1626837_a_at:375:679; Interrogation_Position=2668; Antisense; TAGTCAGCAACGTTCGTAGGTCCAA
>probe:Drosophila_2:1626837_a_at:517:481; Interrogation_Position=2683; Antisense; GTAGGTCCAAAATACGAATGCCAAA
>probe:Drosophila_2:1626837_a_at:64:345; Interrogation_Position=2758; Antisense; GCATTTAAGCCGTACAGAACTGTTT
>probe:Drosophila_2:1626837_a_at:630:383; Interrogation_Position=2774; Antisense; GAACTGTTTTACCAATTGACACCTT
>probe:Drosophila_2:1626837_a_at:377:243; Interrogation_Position=2803; Antisense; AATATTGCATATTCGTATCGGGTAT
>probe:Drosophila_2:1626837_a_at:2:485; Interrogation_Position=2817; Antisense; GTATCGGGTATACACCACACACAAA
>probe:Drosophila_2:1626837_a_at:614:449; Interrogation_Position=2853; Antisense; GATCGTAGAAGGTAGCCTCTCTCGA
>probe:Drosophila_2:1626837_a_at:304:123; Interrogation_Position=2866; Antisense; AGCCTCTCTCGAAGTAGAATCCGTC
>probe:Drosophila_2:1626837_a_at:334:365; Interrogation_Position=2882; Antisense; GAATCCGTCTACTTGAATATGTCTG
>probe:Drosophila_2:1626837_a_at:699:475; Interrogation_Position=2970; Antisense; GTTTACTTTTTAGCGCACTTCATGG
>probe:Drosophila_2:1626837_a_at:692:323; Interrogation_Position=2982; Antisense; GCGCACTTCATGGAATACGAAACGA
>probe:Drosophila_2:1626837_a_at:571:391; Interrogation_Position=3092; Antisense; GAAACGATTTCATTATCCACATACA

Paste this into a BLAST search page for me
TAAAAGTTATCTGAACCCACGCTAAGAACCCACGCTAACAGATGAAATCATAGTCAGCAACGTTCGTAGGTCCAAGTAGGTCCAAAATACGAATGCCAAAGCATTTAAGCCGTACAGAACTGTTTGAACTGTTTTACCAATTGACACCTTAATATTGCATATTCGTATCGGGTATGTATCGGGTATACACCACACACAAAGATCGTAGAAGGTAGCCTCTCTCGAAGCCTCTCTCGAAGTAGAATCCGTCGAATCCGTCTACTTGAATATGTCTGGTTTACTTTTTAGCGCACTTCATGGGCGCACTTCATGGAATACGAAACGAGAAACGATTTCATTATCCACATACA

Full Affymetrix probeset data:

Annotations for 1626837_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720