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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626841_s_at:

>probe:Drosophila_2:1626841_s_at:713:705; Interrogation_Position=6684; Antisense; TTATGTGAAACGTCGCTGGGCTACA
>probe:Drosophila_2:1626841_s_at:239:297; Interrogation_Position=6697; Antisense; CGCTGGGCTACAAGATGGACGATCT
>probe:Drosophila_2:1626841_s_at:147:557; Interrogation_Position=6713; Antisense; GGACGATCTGCTGACTTCATATATC
>probe:Drosophila_2:1626841_s_at:74:273; Interrogation_Position=6730; Antisense; CATATATCTCGTTGATGTTGACCAA
>probe:Drosophila_2:1626841_s_at:226:295; Interrogation_Position=6768; Antisense; CGAACCATTCGAGCCAACTAGTAAA
>probe:Drosophila_2:1626841_s_at:558:663; Interrogation_Position=6874; Antisense; TAAATCATACTTAATACCCACCTCC
>probe:Drosophila_2:1626841_s_at:339:129; Interrogation_Position=6893; Antisense; ACCTCCCTTTATTCCAATTGCATTC
>probe:Drosophila_2:1626841_s_at:161:247; Interrogation_Position=6908; Antisense; AATTGCATTCCCTTCCCAGAGAATT
>probe:Drosophila_2:1626841_s_at:2:311; Interrogation_Position=6937; Antisense; CCAATTTTGGTCTTGTTCAGCTATC
>probe:Drosophila_2:1626841_s_at:483:711; Interrogation_Position=6952; Antisense; TTCAGCTATCGATTATACCAAACCA
>probe:Drosophila_2:1626841_s_at:270:157; Interrogation_Position=7027; Antisense; ACACGTTTAGGTATTCTTATGGCAC
>probe:Drosophila_2:1626841_s_at:280:271; Interrogation_Position=7042; Antisense; CTTATGGCACATTCCGGTTAAATTA
>probe:Drosophila_2:1626841_s_at:113:719; Interrogation_Position=7122; Antisense; TTGTATCTACACATATTGCATCTAT
>probe:Drosophila_2:1626841_s_at:730:683; Interrogation_Position=7156; Antisense; TATCCTAACTGCATATCTGTACTGA

Paste this into a BLAST search page for me
TTATGTGAAACGTCGCTGGGCTACACGCTGGGCTACAAGATGGACGATCTGGACGATCTGCTGACTTCATATATCCATATATCTCGTTGATGTTGACCAACGAACCATTCGAGCCAACTAGTAAATAAATCATACTTAATACCCACCTCCACCTCCCTTTATTCCAATTGCATTCAATTGCATTCCCTTCCCAGAGAATTCCAATTTTGGTCTTGTTCAGCTATCTTCAGCTATCGATTATACCAAACCAACACGTTTAGGTATTCTTATGGCACCTTATGGCACATTCCGGTTAAATTATTGTATCTACACATATTGCATCTATTATCCTAACTGCATATCTGTACTGA

Full Affymetrix probeset data:

Annotations for 1626841_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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