FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626985_a_at:

>probe:Drosophila_2:1626985_a_at:541:561; Interrogation_Position=2305; Antisense; GGAACCTCTTCAATCGGATAGGCTT
>probe:Drosophila_2:1626985_a_at:371:229; Interrogation_Position=2373; Antisense; AATGAGGTGGCCAAACTGTTCGAGA
>probe:Drosophila_2:1626985_a_at:338:143; Interrogation_Position=2387; Antisense; ACTGTTCGAGATTCACGCGTAGAGA
>probe:Drosophila_2:1626985_a_at:434:423; Interrogation_Position=2408; Antisense; GAGAACAGCGAGTCCCGAGGGACCA
>probe:Drosophila_2:1626985_a_at:63:215; Interrogation_Position=2438; Antisense; AAGATCTGGCTACCCTGATATGCTT
>probe:Drosophila_2:1626985_a_at:690:457; Interrogation_Position=2454; Antisense; GATATGCTTATCAGCACGCACCGAA
>probe:Drosophila_2:1626985_a_at:315:385; Interrogation_Position=2476; Antisense; GAACAGAACCTATCCAACCCGAATG
>probe:Drosophila_2:1626985_a_at:514:251; Interrogation_Position=2490; Antisense; CAACCCGAATGCCTTTAACTGTGTT
>probe:Drosophila_2:1626985_a_at:567:669; Interrogation_Position=2515; Antisense; TACTGTGTACATTTGCAACTGCAAC
>probe:Drosophila_2:1626985_a_at:558:351; Interrogation_Position=2640; Antisense; GCAGCAAAGTGCATATCTCCGTGTA
>probe:Drosophila_2:1626985_a_at:646:251; Interrogation_Position=2684; Antisense; CAAGCGGGTCTCTGTTGAATTGTGT
>probe:Drosophila_2:1626985_a_at:196:689; Interrogation_Position=2755; Antisense; TTCACCGTACCAACTAAACTGTTCA
>probe:Drosophila_2:1626985_a_at:691:183; Interrogation_Position=2802; Antisense; AAAATCCGCTTTTTGATCCTGAGGC
>probe:Drosophila_2:1626985_a_at:37:447; Interrogation_Position=2816; Antisense; GATCCTGAGGCACCCGTTATTTAAC

Paste this into a BLAST search page for me
GGAACCTCTTCAATCGGATAGGCTTAATGAGGTGGCCAAACTGTTCGAGAACTGTTCGAGATTCACGCGTAGAGAGAGAACAGCGAGTCCCGAGGGACCAAAGATCTGGCTACCCTGATATGCTTGATATGCTTATCAGCACGCACCGAAGAACAGAACCTATCCAACCCGAATGCAACCCGAATGCCTTTAACTGTGTTTACTGTGTACATTTGCAACTGCAACGCAGCAAAGTGCATATCTCCGTGTACAAGCGGGTCTCTGTTGAATTGTGTTTCACCGTACCAACTAAACTGTTCAAAAATCCGCTTTTTGATCCTGAGGCGATCCTGAGGCACCCGTTATTTAAC

Full Affymetrix probeset data:

Annotations for 1626985_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720