FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1626996_s_at:

>probe:Drosophila_2:1626996_s_at:694:117; Interrogation_Position=3337; Antisense; AGCTGGGCCGGAGTCAATCAACGGA
>probe:Drosophila_2:1626996_s_at:160:653; Interrogation_Position=3350; Antisense; TCAATCAACGGAGGCGGACAGGAGT
>probe:Drosophila_2:1626996_s_at:706:83; Interrogation_Position=3395; Antisense; AGTGGCACGCCCACTGTCGATCTCA
>probe:Drosophila_2:1626996_s_at:275:453; Interrogation_Position=3413; Antisense; GATCTCACCCAGCTGGAGCACGCGG
>probe:Drosophila_2:1626996_s_at:87:675; Interrogation_Position=3495; Antisense; TAGCACATCAGCATCCGATGTCCCA
>probe:Drosophila_2:1626996_s_at:356:353; Interrogation_Position=3565; Antisense; GCACCAGCATCCATATGAACGCATG
>probe:Drosophila_2:1626996_s_at:446:381; Interrogation_Position=3581; Antisense; GAACGCATGAATTTACTAGACCAAT
>probe:Drosophila_2:1626996_s_at:230:675; Interrogation_Position=3597; Antisense; TAGACCAATAAGCAAGGCGCCAGAA
>probe:Drosophila_2:1626996_s_at:389:227; Interrogation_Position=3610; Antisense; AAGGCGCCAGAAAGTATGCTACGAA
>probe:Drosophila_2:1626996_s_at:320:51; Interrogation_Position=3625; Antisense; ATGCTACGAATGATGATCGGGCAAC
>probe:Drosophila_2:1626996_s_at:360:605; Interrogation_Position=3638; Antisense; TGATCGGGCAACAGACACACGCACA
>probe:Drosophila_2:1626996_s_at:667:457; Interrogation_Position=3799; Antisense; GATTAGGACTATACTACTACCACGT
>probe:Drosophila_2:1626996_s_at:393:671; Interrogation_Position=3816; Antisense; TACCACGTAGACATTTCAATTTCGG
>probe:Drosophila_2:1626996_s_at:567:247; Interrogation_Position=3832; Antisense; CAATTTCGGATCTCACAGAACGGAA

Paste this into a BLAST search page for me
AGCTGGGCCGGAGTCAATCAACGGATCAATCAACGGAGGCGGACAGGAGTAGTGGCACGCCCACTGTCGATCTCAGATCTCACCCAGCTGGAGCACGCGGTAGCACATCAGCATCCGATGTCCCAGCACCAGCATCCATATGAACGCATGGAACGCATGAATTTACTAGACCAATTAGACCAATAAGCAAGGCGCCAGAAAAGGCGCCAGAAAGTATGCTACGAAATGCTACGAATGATGATCGGGCAACTGATCGGGCAACAGACACACGCACAGATTAGGACTATACTACTACCACGTTACCACGTAGACATTTCAATTTCGGCAATTTCGGATCTCACAGAACGGAA

Full Affymetrix probeset data:

Annotations for 1626996_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720