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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627066_at:

>probe:Drosophila_2:1627066_at:77:463; Interrogation_Position=1014; Antisense; GATTACCCTCGTGGTTCGACGACGA
>probe:Drosophila_2:1627066_at:36:411; Interrogation_Position=1031; Antisense; GACGACGAGCGCCTGAACGACATCG
>probe:Drosophila_2:1627066_at:417:377; Interrogation_Position=1105; Antisense; GAAGCGCCAGCGTCTCTACACGGAG
>probe:Drosophila_2:1627066_at:117:485; Interrogation_Position=1179; Antisense; GTATGCGAGCTTCGATAGAGTCCGA
>probe:Drosophila_2:1627066_at:676:677; Interrogation_Position=1194; Antisense; TAGAGTCCGATTCTTTTGCTTTTTT
>probe:Drosophila_2:1627066_at:63:447; Interrogation_Position=1246; Antisense; GATGCTTGACTTTCTGTGTTCTTTA
>probe:Drosophila_2:1627066_at:411:507; Interrogation_Position=1261; Antisense; GTGTTCTTTATGTGTTCGTTTTCGC
>probe:Drosophila_2:1627066_at:455:159; Interrogation_Position=786; Antisense; ACAACTCAACGCATCAGTCGATCAA
>probe:Drosophila_2:1627066_at:276:615; Interrogation_Position=819; Antisense; TGAATATCAGCAACCGGGCGGAGAT
>probe:Drosophila_2:1627066_at:402:109; Interrogation_Position=885; Antisense; AGAATCAGGGCTCCTTGCTGGACGA
>probe:Drosophila_2:1627066_at:407:137; Interrogation_Position=909; Antisense; ACGACGAGGTGTTCTCCGACTCACT
>probe:Drosophila_2:1627066_at:59:525; Interrogation_Position=948; Antisense; GGGAGAGCATGTGTGCACCCTACAT
>probe:Drosophila_2:1627066_at:582:529; Interrogation_Position=978; Antisense; GGGATGTCGTCTCGGAAACACTCTT
>probe:Drosophila_2:1627066_at:643:187; Interrogation_Position=994; Antisense; AACACTCTTCTTTGCCCACGGATTA

Paste this into a BLAST search page for me
GATTACCCTCGTGGTTCGACGACGAGACGACGAGCGCCTGAACGACATCGGAAGCGCCAGCGTCTCTACACGGAGGTATGCGAGCTTCGATAGAGTCCGATAGAGTCCGATTCTTTTGCTTTTTTGATGCTTGACTTTCTGTGTTCTTTAGTGTTCTTTATGTGTTCGTTTTCGCACAACTCAACGCATCAGTCGATCAATGAATATCAGCAACCGGGCGGAGATAGAATCAGGGCTCCTTGCTGGACGAACGACGAGGTGTTCTCCGACTCACTGGGAGAGCATGTGTGCACCCTACATGGGATGTCGTCTCGGAAACACTCTTAACACTCTTCTTTGCCCACGGATTA

Full Affymetrix probeset data:

Annotations for 1627066_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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