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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627080_at:

>probe:Drosophila_2:1627080_at:66:499; Interrogation_Position=1133; Antisense; GTCTATCCATTATCCTGTTCCAGAA
>probe:Drosophila_2:1627080_at:201:643; Interrogation_Position=1189; Antisense; TCTCTTCTTGTTGGTGCCTTCATCA
>probe:Drosophila_2:1627080_at:215:593; Interrogation_Position=1232; Antisense; TGGTGGGCACTCTAGATCCAGCAAA
>probe:Drosophila_2:1627080_at:90:179; Interrogation_Position=1254; Antisense; AAACTACTCTGTACTCCTGGGATTC
>probe:Drosophila_2:1627080_at:721:285; Interrogation_Position=1270; Antisense; CTGGGATTCATGGTGTGCTTGGCAA
>probe:Drosophila_2:1627080_at:563:95; Interrogation_Position=1294; Antisense; AGATTCGGAGCGGTTGTTGCCTACG
>probe:Drosophila_2:1627080_at:697:485; Interrogation_Position=1332; Antisense; GTACGCGGCGGAGATTATACCTACC
>probe:Drosophila_2:1627080_at:634:25; Interrogation_Position=1348; Antisense; ATACCTACCAGTGTTCGAGGACGAG
>probe:Drosophila_2:1627080_at:200:9; Interrogation_Position=1455; Antisense; ATTGCCCTCACTGTTGATCAGCTTC
>probe:Drosophila_2:1627080_at:189:117; Interrogation_Position=1474; Antisense; AGCTTCCTCCTCATTATAGGCGCTT
>probe:Drosophila_2:1627080_at:40:603; Interrogation_Position=1498; Antisense; TGTTTGTGCCTAACTCTTCCAGAAA
>probe:Drosophila_2:1627080_at:445:419; Interrogation_Position=1579; Antisense; GAGAAATGGTACTTTTTCCCTTGCT
>probe:Drosophila_2:1627080_at:143:343; Interrogation_Position=1601; Antisense; GCTTTTCACGCAAACGGCAGTCGAA
>probe:Drosophila_2:1627080_at:591:631; Interrogation_Position=1630; Antisense; TCCGAATCTCAGTTGGAGTCAGCCA

Paste this into a BLAST search page for me
GTCTATCCATTATCCTGTTCCAGAATCTCTTCTTGTTGGTGCCTTCATCATGGTGGGCACTCTAGATCCAGCAAAAAACTACTCTGTACTCCTGGGATTCCTGGGATTCATGGTGTGCTTGGCAAAGATTCGGAGCGGTTGTTGCCTACGGTACGCGGCGGAGATTATACCTACCATACCTACCAGTGTTCGAGGACGAGATTGCCCTCACTGTTGATCAGCTTCAGCTTCCTCCTCATTATAGGCGCTTTGTTTGTGCCTAACTCTTCCAGAAAGAGAAATGGTACTTTTTCCCTTGCTGCTTTTCACGCAAACGGCAGTCGAATCCGAATCTCAGTTGGAGTCAGCCA

Full Affymetrix probeset data:

Annotations for 1627080_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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