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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627084_s_at:

>probe:Drosophila_2:1627084_s_at:52:563; Interrogation_Position=2360; Antisense; GGAACCCAATCTGCAAGAACCCAAT
>probe:Drosophila_2:1627084_s_at:612:107; Interrogation_Position=2375; Antisense; AGAACCCAATCTGCAAGAGCCCAAT
>probe:Drosophila_2:1627084_s_at:51:563; Interrogation_Position=2405; Antisense; GGAACCCAATCTGCAAGACGCCATT
>probe:Drosophila_2:1627084_s_at:50:563; Interrogation_Position=2450; Antisense; GGAACCTAATCTGCAAGACGCCACT
>probe:Drosophila_2:1627084_s_at:240:75; Interrogation_Position=2509; Antisense; AGGAGCTCAATCTGCAAGACGCCAC
>probe:Drosophila_2:1627084_s_at:463:101; Interrogation_Position=2555; Antisense; AGAGCAGGAGATGTCCCAACCACGT
>probe:Drosophila_2:1627084_s_at:703:589; Interrogation_Position=2579; Antisense; TGGTCGCATCTTTGAGCCACTGCAG
>probe:Drosophila_2:1627084_s_at:673:345; Interrogation_Position=2603; Antisense; GCATCAACTGCTCGACGGCTTAATT
>probe:Drosophila_2:1627084_s_at:621:85; Interrogation_Position=2641; Antisense; AGTGCGCTTGCGCTATCAACTACAA
>probe:Drosophila_2:1627084_s_at:417:161; Interrogation_Position=2671; Antisense; AAATATTCGTCCTACAGATCCTGCG
>probe:Drosophila_2:1627084_s_at:114:97; Interrogation_Position=2686; Antisense; AGATCCTGCGCGTCCACAAAAAGTC
>probe:Drosophila_2:1627084_s_at:357:465; Interrogation_Position=2737; Antisense; GATTGCGAAGACACCAGCGATCCCA
>probe:Drosophila_2:1627084_s_at:546:465; Interrogation_Position=2882; Antisense; GTTGTAACCGTTGGCCAAATGGCAT
>probe:Drosophila_2:1627084_s_at:196:571; Interrogation_Position=2902; Antisense; GGCATTGTTTTTTGTACCCATACAT

Paste this into a BLAST search page for me
GGAACCCAATCTGCAAGAACCCAATAGAACCCAATCTGCAAGAGCCCAATGGAACCCAATCTGCAAGACGCCATTGGAACCTAATCTGCAAGACGCCACTAGGAGCTCAATCTGCAAGACGCCACAGAGCAGGAGATGTCCCAACCACGTTGGTCGCATCTTTGAGCCACTGCAGGCATCAACTGCTCGACGGCTTAATTAGTGCGCTTGCGCTATCAACTACAAAAATATTCGTCCTACAGATCCTGCGAGATCCTGCGCGTCCACAAAAAGTCGATTGCGAAGACACCAGCGATCCCAGTTGTAACCGTTGGCCAAATGGCATGGCATTGTTTTTTGTACCCATACAT

Full Affymetrix probeset data:

Annotations for 1627084_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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