FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627155_s_at:

>probe:Drosophila_2:1627155_s_at:469:143; Interrogation_Position=1013; Antisense; ACTGTCATTTGAACTTTGGCACTGT
>probe:Drosophila_2:1627155_s_at:228:139; Interrogation_Position=1090; Antisense; ACGTCGATTGTTTTTTCTTGCTACA
>probe:Drosophila_2:1627155_s_at:664:337; Interrogation_Position=1109; Antisense; GCTACATTCCCTGCTCTAAATTTTA
>probe:Drosophila_2:1627155_s_at:222:461; Interrogation_Position=1151; Antisense; GATTTTTCCGAAGGCAGCAATTACT
>probe:Drosophila_2:1627155_s_at:94:591; Interrogation_Position=730; Antisense; TGGTATCGTCTATCTGCATGTGGTA
>probe:Drosophila_2:1627155_s_at:593:483; Interrogation_Position=752; Antisense; GTATGTGCCGGTGAGTCAAGCTCCA
>probe:Drosophila_2:1627155_s_at:671:251; Interrogation_Position=768; Antisense; CAAGCTCCAAGTGGGTCACTCTGGA
>probe:Drosophila_2:1627155_s_at:107:467; Interrogation_Position=821; Antisense; GTTGTTGCCTACACCAAACTGCAGC
>probe:Drosophila_2:1627155_s_at:456:681; Interrogation_Position=857; Antisense; TATGGCATACCGATGGACGTTCTGT
>probe:Drosophila_2:1627155_s_at:104:409; Interrogation_Position=872; Antisense; GACGTTCTGTTCGACTGATGGTGAT
>probe:Drosophila_2:1627155_s_at:407:513; Interrogation_Position=892; Antisense; GTGATGCATAAACCAGATTCTTCGT
>probe:Drosophila_2:1627155_s_at:170:617; Interrogation_Position=926; Antisense; TGCAGTGTACCGCACATGGACGATG
>probe:Drosophila_2:1627155_s_at:549:725; Interrogation_Position=965; Antisense; TTGATTAGCTCCGTTTGGCTTGTAC
>probe:Drosophila_2:1627155_s_at:240:659; Interrogation_Position=996; Antisense; TAAGCTGGACCATGGCAACTGTCAT

Paste this into a BLAST search page for me
ACTGTCATTTGAACTTTGGCACTGTACGTCGATTGTTTTTTCTTGCTACAGCTACATTCCCTGCTCTAAATTTTAGATTTTTCCGAAGGCAGCAATTACTTGGTATCGTCTATCTGCATGTGGTAGTATGTGCCGGTGAGTCAAGCTCCACAAGCTCCAAGTGGGTCACTCTGGAGTTGTTGCCTACACCAAACTGCAGCTATGGCATACCGATGGACGTTCTGTGACGTTCTGTTCGACTGATGGTGATGTGATGCATAAACCAGATTCTTCGTTGCAGTGTACCGCACATGGACGATGTTGATTAGCTCCGTTTGGCTTGTACTAAGCTGGACCATGGCAACTGTCAT

Full Affymetrix probeset data:

Annotations for 1627155_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720