FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627191_a_at:

>probe:Drosophila_2:1627191_a_at:308:527; Interrogation_Position=3263; Antisense; GGGAAGAACTGCTTACCGACATCTA
>probe:Drosophila_2:1627191_a_at:532:193; Interrogation_Position=3302; Antisense; AACTCTGTTGTACATTATTTTGCAT
>probe:Drosophila_2:1627191_a_at:383:7; Interrogation_Position=3363; Antisense; ATTGCTTGCAATCTTCGGTATATCG
>probe:Drosophila_2:1627191_a_at:705:643; Interrogation_Position=3374; Antisense; TCTTCGGTATATCGTAATCATCCCC
>probe:Drosophila_2:1627191_a_at:480:679; Interrogation_Position=3406; Antisense; TTCGTTTGTTCTCCATACTACCCCA
>probe:Drosophila_2:1627191_a_at:66:697; Interrogation_Position=3440; Antisense; TTTAGTTTGTTATGCTCGCCGGGAT
>probe:Drosophila_2:1627191_a_at:55:531; Interrogation_Position=3460; Antisense; GGGATTTATCTATTGTTTCGTACCA
>probe:Drosophila_2:1627191_a_at:322:107; Interrogation_Position=3528; Antisense; AGAACGTATCTCTCTATACACAGCC
>probe:Drosophila_2:1627191_a_at:233:185; Interrogation_Position=3662; Antisense; AACAATTCCACAAACGTCATCCATC
>probe:Drosophila_2:1627191_a_at:403:139; Interrogation_Position=3675; Antisense; ACGTCATCCATCAAAGCTCCTGAAA
>probe:Drosophila_2:1627191_a_at:344:559; Interrogation_Position=3704; Antisense; GGAAAAACTCCACGCATTTCCTACA
>probe:Drosophila_2:1627191_a_at:7:203; Interrogation_Position=3733; Antisense; AACCACAACATTTTCCTAAGCACAC
>probe:Drosophila_2:1627191_a_at:351:357; Interrogation_Position=3752; Antisense; GCACACGATCTCATACGACTCAATT
>probe:Drosophila_2:1627191_a_at:617:379; Interrogation_Position=3780; Antisense; GAACCAGCAAGTCTTCAGCAAATCA

Paste this into a BLAST search page for me
GGGAAGAACTGCTTACCGACATCTAAACTCTGTTGTACATTATTTTGCATATTGCTTGCAATCTTCGGTATATCGTCTTCGGTATATCGTAATCATCCCCTTCGTTTGTTCTCCATACTACCCCATTTAGTTTGTTATGCTCGCCGGGATGGGATTTATCTATTGTTTCGTACCAAGAACGTATCTCTCTATACACAGCCAACAATTCCACAAACGTCATCCATCACGTCATCCATCAAAGCTCCTGAAAGGAAAAACTCCACGCATTTCCTACAAACCACAACATTTTCCTAAGCACACGCACACGATCTCATACGACTCAATTGAACCAGCAAGTCTTCAGCAAATCA

Full Affymetrix probeset data:

Annotations for 1627191_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720