Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627206_at:

>probe:Drosophila_2:1627206_at:448:693; Interrogation_Position=109; Antisense; TTTCCGGAGAGGTTGCGTTAAGCCA
>probe:Drosophila_2:1627206_at:679:425; Interrogation_Position=115; Antisense; GAGAGGTTGCGTTAAGCCACGTGCT
>probe:Drosophila_2:1627206_at:617:435; Interrogation_Position=117; Antisense; GAGGTTGCGTTAAGCCACGTGCTGA
>probe:Drosophila_2:1627206_at:479:469; Interrogation_Position=120; Antisense; GTTGCGTTAAGCCACGTGCTGAATT
>probe:Drosophila_2:1627206_at:564:327; Interrogation_Position=123; Antisense; GCGTTAAGCCACGTGCTGAATTTCT
>probe:Drosophila_2:1627206_at:545:203; Interrogation_Position=128; Antisense; AAGCCACGTGCTGAATTTCTTAATT
>probe:Drosophila_2:1627206_at:229:139; Interrogation_Position=133; Antisense; ACGTGCTGAATTTCTTAATTTGCTG
>probe:Drosophila_2:1627206_at:48:365; Interrogation_Position=140; Antisense; GAATTTCTTAATTTGCTGGTTTAGT
>probe:Drosophila_2:1627206_at:490:243; Interrogation_Position=149; Antisense; AATTTGCTGGTTTAGTGAATACGGA
>probe:Drosophila_2:1627206_at:432:331; Interrogation_Position=161; Antisense; TAGTGAATACGGAAAATTCGTTGGT
>probe:Drosophila_2:1627206_at:285:293; Interrogation_Position=179; Antisense; CGTTGGTTTTTTTGTTCTGTGCTGA
>probe:Drosophila_2:1627206_at:144:701; Interrogation_Position=186; Antisense; TTTTTTGTTCTGTGCTGAGTGTTAA
>probe:Drosophila_2:1627206_at:454:601; Interrogation_Position=191; Antisense; TGTTCTGTGCTGAGTGTTAAAGAGC
>probe:Drosophila_2:1627206_at:488:99; Interrogation_Position=211; Antisense; AGAGCAGAGCTAGAAAAATGGTGAA

Paste this into a BLAST search page for me
TTTCCGGAGAGGTTGCGTTAAGCCAGAGAGGTTGCGTTAAGCCACGTGCTGAGGTTGCGTTAAGCCACGTGCTGAGTTGCGTTAAGCCACGTGCTGAATTGCGTTAAGCCACGTGCTGAATTTCTAAGCCACGTGCTGAATTTCTTAATTACGTGCTGAATTTCTTAATTTGCTGGAATTTCTTAATTTGCTGGTTTAGTAATTTGCTGGTTTAGTGAATACGGATAGTGAATACGGAAAATTCGTTGGTCGTTGGTTTTTTTGTTCTGTGCTGATTTTTTGTTCTGTGCTGAGTGTTAATGTTCTGTGCTGAGTGTTAAAGAGCAGAGCAGAGCTAGAAAAATGGTGAA

Full Affymetrix probeset data:

Annotations for 1627206_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime