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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627216_s_at:

>probe:Drosophila_2:1627216_s_at:283:175; Interrogation_Position=1431; Antisense; AAACCTTTCTATGCATTAGACGGCA
>probe:Drosophila_2:1627216_s_at:42:707; Interrogation_Position=1446; Antisense; TTAGACGGCAAACCCTATTGCGAAT
>probe:Drosophila_2:1627216_s_at:115:621; Interrogation_Position=1497; Antisense; TGCTCTGTTTGCATGGAACCAATTT
>probe:Drosophila_2:1627216_s_at:448:561; Interrogation_Position=1545; Antisense; GGAAAACCATATCATCCGCAATGTT
>probe:Drosophila_2:1627216_s_at:264:181; Interrogation_Position=1660; Antisense; AAAAATTTGCCCCTCGCTGTTGTGT
>probe:Drosophila_2:1627216_s_at:684:333; Interrogation_Position=1675; Antisense; GCTGTTGTGTCTGCAAGCAACCAAT
>probe:Drosophila_2:1627216_s_at:31:203; Interrogation_Position=1693; Antisense; AACCAATTATGCCAGATCCAGGACA
>probe:Drosophila_2:1627216_s_at:563:391; Interrogation_Position=1722; Antisense; GAAACGATCAGAGTAGTGGCCCTAG
>probe:Drosophila_2:1627216_s_at:455:83; Interrogation_Position=1736; Antisense; AGTGGCCCTAGATCGAAGTTTTCAT
>probe:Drosophila_2:1627216_s_at:296:73; Interrogation_Position=1780; Antisense; AGGACTGTGGGCTCTTACTATCATC
>probe:Drosophila_2:1627216_s_at:210:37; Interrogation_Position=1799; Antisense; ATCATCTGAAGCTGAGGGCCGCGGA
>probe:Drosophila_2:1627216_s_at:310:81; Interrogation_Position=1813; Antisense; AGGGCCGCGGATGTTATCCCCTGGA
>probe:Drosophila_2:1627216_s_at:62:47; Interrogation_Position=1828; Antisense; ATCCCCTGGATGACCATGTTCTATG
>probe:Drosophila_2:1627216_s_at:522:7; Interrogation_Position=1879; Antisense; AGGCTTTAACAAACCGCATGACGTC

Paste this into a BLAST search page for me
AAACCTTTCTATGCATTAGACGGCATTAGACGGCAAACCCTATTGCGAATTGCTCTGTTTGCATGGAACCAATTTGGAAAACCATATCATCCGCAATGTTAAAAATTTGCCCCTCGCTGTTGTGTGCTGTTGTGTCTGCAAGCAACCAATAACCAATTATGCCAGATCCAGGACAGAAACGATCAGAGTAGTGGCCCTAGAGTGGCCCTAGATCGAAGTTTTCATAGGACTGTGGGCTCTTACTATCATCATCATCTGAAGCTGAGGGCCGCGGAAGGGCCGCGGATGTTATCCCCTGGAATCCCCTGGATGACCATGTTCTATGAGGCTTTAACAAACCGCATGACGTC

Full Affymetrix probeset data:

Annotations for 1627216_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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