FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627239_s_at:

>probe:Drosophila_2:1627239_s_at:285:267; Interrogation_Position=3926; Antisense; CAGTCTATCATTATACGTGCCTATG
>probe:Drosophila_2:1627239_s_at:69:507; Interrogation_Position=3942; Antisense; GTGCCTATGATACGAATCTGCCAAA
>probe:Drosophila_2:1627239_s_at:692:365; Interrogation_Position=3955; Antisense; GAATCTGCCAAAGCCCGAGGGTAAC
>probe:Drosophila_2:1627239_s_at:227:199; Interrogation_Position=3989; Antisense; AACGATGGGACTCTGGATCTCACGG
>probe:Drosophila_2:1627239_s_at:310:453; Interrogation_Position=4004; Antisense; GATCTCACGGTGCACATGTATATAG
>probe:Drosophila_2:1627239_s_at:315:199; Interrogation_Position=4032; Antisense; AACGCAAGGAGCTACGATTTCGATT
>probe:Drosophila_2:1627239_s_at:502:673; Interrogation_Position=4073; Antisense; TAGAGCACACTTCTGGTAGGCCAAA
>probe:Drosophila_2:1627239_s_at:453:387; Interrogation_Position=4159; Antisense; GAAAAACATTTCGTAGACGCCACTA
>probe:Drosophila_2:1627239_s_at:138:217; Interrogation_Position=4210; Antisense; AAGTTTATCTTTCTATTTGCTGTTA
>probe:Drosophila_2:1627239_s_at:251:687; Interrogation_Position=4298; Antisense; TATTTTTTGTATCTGTCCCCTTGTC
>probe:Drosophila_2:1627239_s_at:68:299; Interrogation_Position=4323; Antisense; CGCGGCGCAGCTTTGTGATACGGAT
>probe:Drosophila_2:1627239_s_at:570:455; Interrogation_Position=4339; Antisense; GATACGGATACAGACTTGCATTCTT
>probe:Drosophila_2:1627239_s_at:355:367; Interrogation_Position=4462; Antisense; GAATCTGTATTTTTCGGTCACCGAA
>probe:Drosophila_2:1627239_s_at:445:495; Interrogation_Position=4478; Antisense; GTCACCGAACCGCTGATATTTAATG

Paste this into a BLAST search page for me
CAGTCTATCATTATACGTGCCTATGGTGCCTATGATACGAATCTGCCAAAGAATCTGCCAAAGCCCGAGGGTAACAACGATGGGACTCTGGATCTCACGGGATCTCACGGTGCACATGTATATAGAACGCAAGGAGCTACGATTTCGATTTAGAGCACACTTCTGGTAGGCCAAAGAAAAACATTTCGTAGACGCCACTAAAGTTTATCTTTCTATTTGCTGTTATATTTTTTGTATCTGTCCCCTTGTCCGCGGCGCAGCTTTGTGATACGGATGATACGGATACAGACTTGCATTCTTGAATCTGTATTTTTCGGTCACCGAAGTCACCGAACCGCTGATATTTAATG

Full Affymetrix probeset data:

Annotations for 1627239_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720