Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627276_a_at:

>probe:Drosophila_2:1627276_a_at:94:423; Interrogation_Position=1780; Antisense; GATGAAAAATCGCCACCGTCCCCGG
>probe:Drosophila_2:1627276_a_at:73:275; Interrogation_Position=2038; Antisense; CATTCCATACCGGTTAGCTATATCC
>probe:Drosophila_2:1627276_a_at:445:249; Interrogation_Position=2043; Antisense; CATACCGGTTAGCTATATCCGGATG
>probe:Drosophila_2:1627276_a_at:28:403; Interrogation_Position=2076; Antisense; GACTTCCGGATGGATCATAGTTCGC
>probe:Drosophila_2:1627276_a_at:728:715; Interrogation_Position=2079; Antisense; TTCCGGATGGATCATAGTTCGCTCG
>probe:Drosophila_2:1627276_a_at:598:289; Interrogation_Position=2082; Antisense; CGGATGGATCATAGTTCGCTCGGTG
>probe:Drosophila_2:1627276_a_at:441:441; Interrogation_Position=2084; Antisense; GATGGATCATAGTTCGCTCGGTGGA
>probe:Drosophila_2:1627276_a_at:377:65; Interrogation_Position=2085; Antisense; ATGGATCATAGTTCGCTCGGTGGAC
>probe:Drosophila_2:1627276_a_at:20:563; Interrogation_Position=2159; Antisense; GGAATGGGTATAGTTCCTATGCCAT
>probe:Drosophila_2:1627276_a_at:503:163; Interrogation_Position=2191; Antisense; AAATTTGATGACCACAGCGATGCAC
>probe:Drosophila_2:1627276_a_at:700:243; Interrogation_Position=2192; Antisense; AATTTGATGACCACAGCGATGCACT
>probe:Drosophila_2:1627276_a_at:39:693; Interrogation_Position=2194; Antisense; TTTGATGACCACAGCGATGCACTGT
>probe:Drosophila_2:1627276_a_at:620:609; Interrogation_Position=2199; Antisense; TGACCACAGCGATGCACTGTGCGAT
>probe:Drosophila_2:1627276_a_at:525:127; Interrogation_Position=2201; Antisense; ACCACAGCGATGCACTGTGCGATGC

Paste this into a BLAST search page for me
GATGAAAAATCGCCACCGTCCCCGGCATTCCATACCGGTTAGCTATATCCCATACCGGTTAGCTATATCCGGATGGACTTCCGGATGGATCATAGTTCGCTTCCGGATGGATCATAGTTCGCTCGCGGATGGATCATAGTTCGCTCGGTGGATGGATCATAGTTCGCTCGGTGGAATGGATCATAGTTCGCTCGGTGGACGGAATGGGTATAGTTCCTATGCCATAAATTTGATGACCACAGCGATGCACAATTTGATGACCACAGCGATGCACTTTTGATGACCACAGCGATGCACTGTTGACCACAGCGATGCACTGTGCGATACCACAGCGATGCACTGTGCGATGC

Full Affymetrix probeset data:

Annotations for 1627276_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime