FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627277_s_at:

>probe:Drosophila_2:1627277_s_at:138:529; Interrogation_Position=2250; Antisense; GGGACTGGAGTTCTCATACGCCCAG
>probe:Drosophila_2:1627277_s_at:627:71; Interrogation_Position=2273; Antisense; AGGCACCACCCAGCATGAAGAGTGT
>probe:Drosophila_2:1627277_s_at:53:497; Interrogation_Position=2338; Antisense; GTCATTGTGGTCGTCATCGCCGAGG
>probe:Drosophila_2:1627277_s_at:343:439; Interrogation_Position=2359; Antisense; GAGGCCGCCTTATTCGAATCGCAGG
>probe:Drosophila_2:1627277_s_at:634:59; Interrogation_Position=2413; Antisense; ATGTTCGCCGACATGTTGATCTTCA
>probe:Drosophila_2:1627277_s_at:448:723; Interrogation_Position=2428; Antisense; TTGATCTTCATGGTGATGGCCTACT
>probe:Drosophila_2:1627277_s_at:337:607; Interrogation_Position=2441; Antisense; TGATGGCCTACTACTATGTGCCCAA
>probe:Drosophila_2:1627277_s_at:721:595; Interrogation_Position=2457; Antisense; TGTGCCCAACGATCCGAACAAGGTG
>probe:Drosophila_2:1627277_s_at:501:181; Interrogation_Position=2515; Antisense; AAAACAGAGATTCCCGCTCTCGAAG
>probe:Drosophila_2:1627277_s_at:670:423; Interrogation_Position=2572; Antisense; GAGTAGACCTCAAACCGATTCGTCC
>probe:Drosophila_2:1627277_s_at:47:725; Interrogation_Position=2600; Antisense; TTGCTCCCGCGTTGTGTATTATATA
>probe:Drosophila_2:1627277_s_at:50:601; Interrogation_Position=2659; Antisense; TGTAAATCCTTAGTGGCCTTTGTCC
>probe:Drosophila_2:1627277_s_at:575:315; Interrogation_Position=2674; Antisense; GCCTTTGTCCATTTCCAAGCTAAGT
>probe:Drosophila_2:1627277_s_at:245:221; Interrogation_Position=2701; Antisense; AAGTGAAGCTGCGACCGGGCATTGT

Paste this into a BLAST search page for me
GGGACTGGAGTTCTCATACGCCCAGAGGCACCACCCAGCATGAAGAGTGTGTCATTGTGGTCGTCATCGCCGAGGGAGGCCGCCTTATTCGAATCGCAGGATGTTCGCCGACATGTTGATCTTCATTGATCTTCATGGTGATGGCCTACTTGATGGCCTACTACTATGTGCCCAATGTGCCCAACGATCCGAACAAGGTGAAAACAGAGATTCCCGCTCTCGAAGGAGTAGACCTCAAACCGATTCGTCCTTGCTCCCGCGTTGTGTATTATATATGTAAATCCTTAGTGGCCTTTGTCCGCCTTTGTCCATTTCCAAGCTAAGTAAGTGAAGCTGCGACCGGGCATTGT

Full Affymetrix probeset data:

Annotations for 1627277_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720