Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627278_s_at:

>probe:Drosophila_2:1627278_s_at:221:341; Interrogation_Position=2623; Antisense; GCTTTTCGGAGACACGCTGGAGCAA
>probe:Drosophila_2:1627278_s_at:142:553; Interrogation_Position=2641; Antisense; GGAGCAAGCTGTCCAACATCGTTGA
>probe:Drosophila_2:1627278_s_at:8:365; Interrogation_Position=2664; Antisense; GAATTTCCCACATCAGACAGCGAGC
>probe:Drosophila_2:1627278_s_at:539:613; Interrogation_Position=2689; Antisense; TGAACATGGGCTCCTATGGCGCCAA
>probe:Drosophila_2:1627278_s_at:439:311; Interrogation_Position=2709; Antisense; GCCAACTCCAACTCGAATGTGCATT
>probe:Drosophila_2:1627278_s_at:608:229; Interrogation_Position=2724; Antisense; AATGTGCATTACTCGCTCTATGCGA
>probe:Drosophila_2:1627278_s_at:384:537; Interrogation_Position=2764; Antisense; GGTCAACGGCTGGTGGTCATTATGT
>probe:Drosophila_2:1627278_s_at:176:683; Interrogation_Position=2784; Antisense; TATGTTGCCCTTTGCAAGCATCCAG
>probe:Drosophila_2:1627278_s_at:567:89; Interrogation_Position=2807; Antisense; AGTTTCCCGCAAGTGGCACGAATTT
>probe:Drosophila_2:1627278_s_at:358:121; Interrogation_Position=2847; Antisense; AGCGATGCCTTGTCCGAAAACCATC
>probe:Drosophila_2:1627278_s_at:67:39; Interrogation_Position=2869; Antisense; ATCTCGTTTCATCCAGTGCCTATAT
>probe:Drosophila_2:1627278_s_at:623:505; Interrogation_Position=2884; Antisense; GTGCCTATATTCTTTTCTACGAGCG
>probe:Drosophila_2:1627278_s_at:288:669; Interrogation_Position=2909; Antisense; TACGTAAGGCCCAATCGGTGCTCTA
>probe:Drosophila_2:1627278_s_at:634:351; Interrogation_Position=2937; Antisense; GCAGCACTCTGCATATAGCGATGGA

Paste this into a BLAST search page for me
GCTTTTCGGAGACACGCTGGAGCAAGGAGCAAGCTGTCCAACATCGTTGAGAATTTCCCACATCAGACAGCGAGCTGAACATGGGCTCCTATGGCGCCAAGCCAACTCCAACTCGAATGTGCATTAATGTGCATTACTCGCTCTATGCGAGGTCAACGGCTGGTGGTCATTATGTTATGTTGCCCTTTGCAAGCATCCAGAGTTTCCCGCAAGTGGCACGAATTTAGCGATGCCTTGTCCGAAAACCATCATCTCGTTTCATCCAGTGCCTATATGTGCCTATATTCTTTTCTACGAGCGTACGTAAGGCCCAATCGGTGCTCTAGCAGCACTCTGCATATAGCGATGGA

Full Affymetrix probeset data:

Annotations for 1627278_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime