FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627295_s_at:

>probe:Drosophila_2:1627295_s_at:321:667; Interrogation_Position=1873; Antisense; TACCGAAAGCTCCTGCCGAGTGCGT
>probe:Drosophila_2:1627295_s_at:490:303; Interrogation_Position=1888; Antisense; CCGAGTGCGTGGAGCAACACCAGCA
>probe:Drosophila_2:1627295_s_at:208:115; Interrogation_Position=1909; Antisense; AGCAGCAGCACAACTTTGGGTCCGC
>probe:Drosophila_2:1627295_s_at:615:691; Interrogation_Position=1923; Antisense; TTTGGGTCCGCAGCGCCACATCGGA
>probe:Drosophila_2:1627295_s_at:449:257; Interrogation_Position=1939; Antisense; CACATCGGACGCACACGTGCAAGAT
>probe:Drosophila_2:1627295_s_at:257:291; Interrogation_Position=1954; Antisense; CGTGCAAGATGCAGGCGCAGGCTCA
>probe:Drosophila_2:1627295_s_at:667:297; Interrogation_Position=1969; Antisense; CGCAGGCTCAGGCTCAAAACGAGAT
>probe:Drosophila_2:1627295_s_at:29:211; Interrogation_Position=1996; Antisense; AAGACGTTACATTTTGAGGTGTCAA
>probe:Drosophila_2:1627295_s_at:392:25; Interrogation_Position=2073; Antisense; ATAGGATCCAAATAGTCCGATCACT
>probe:Drosophila_2:1627295_s_at:400:503; Interrogation_Position=2087; Antisense; GTCCGATCACTATAGGATTGGCCAA
>probe:Drosophila_2:1627295_s_at:599:541; Interrogation_Position=2101; Antisense; GGATTGGCCAATATCACACTATTTA
>probe:Drosophila_2:1627295_s_at:115:357; Interrogation_Position=2154; Antisense; GCAACTATTTTTTACCAAACTATGG
>probe:Drosophila_2:1627295_s_at:203:589; Interrogation_Position=2176; Antisense; TGGGTTATTATTTTTAGCTATCCTA
>probe:Drosophila_2:1627295_s_at:215:657; Interrogation_Position=2310; Antisense; TAAGCTTTTCGAAATCCTACACAGA

Paste this into a BLAST search page for me
TACCGAAAGCTCCTGCCGAGTGCGTCCGAGTGCGTGGAGCAACACCAGCAAGCAGCAGCACAACTTTGGGTCCGCTTTGGGTCCGCAGCGCCACATCGGACACATCGGACGCACACGTGCAAGATCGTGCAAGATGCAGGCGCAGGCTCACGCAGGCTCAGGCTCAAAACGAGATAAGACGTTACATTTTGAGGTGTCAAATAGGATCCAAATAGTCCGATCACTGTCCGATCACTATAGGATTGGCCAAGGATTGGCCAATATCACACTATTTAGCAACTATTTTTTACCAAACTATGGTGGGTTATTATTTTTAGCTATCCTATAAGCTTTTCGAAATCCTACACAGA

Full Affymetrix probeset data:

Annotations for 1627295_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720