Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627301_s_at:

>probe:Drosophila_2:1627301_s_at:80:609; Interrogation_Position=1006; Antisense; TGAGTGTGCCTCAACGCAGACATTC
>probe:Drosophila_2:1627301_s_at:291:255; Interrogation_Position=1036; Antisense; CAACATGCTGGTGGTCTGCGAGGAT
>probe:Drosophila_2:1627301_s_at:545:261; Interrogation_Position=1121; Antisense; CAGCCCTTCATTAAGTTCTTCGATC
>probe:Drosophila_2:1627301_s_at:435:625; Interrogation_Position=1167; Antisense; TGCCCTTGGTCAGTCCGAATAAGTC
>probe:Drosophila_2:1627301_s_at:335:657; Interrogation_Position=1186; Antisense; TAAGTCGCTCTGTGTGATCTTCGCA
>probe:Drosophila_2:1627301_s_at:587:453; Interrogation_Position=1201; Antisense; GATCTTCGCATTACTGGAGTCACAG
>probe:Drosophila_2:1627301_s_at:688:547; Interrogation_Position=1216; Antisense; GGAGTCACAGAACCCGGGCTTGAAT
>probe:Drosophila_2:1627301_s_at:297:399; Interrogation_Position=1244; Antisense; GACAGATGGGCCGTCGTTAATCGCT
>probe:Drosophila_2:1627301_s_at:646:99; Interrogation_Position=1293; Antisense; AGAGGCAGGTCGCTCAATTCTGCGA
>probe:Drosophila_2:1627301_s_at:217:245; Interrogation_Position=1308; Antisense; AATTCTGCGACAACGTCCTTATTGA
>probe:Drosophila_2:1627301_s_at:208:301; Interrogation_Position=1368; Antisense; CCGACCGGTGTTCCAAATTGCGATA
>probe:Drosophila_2:1627301_s_at:297:327; Interrogation_Position=1387; Antisense; GCGATACTGTTTCTGGCAACTTAAA
>probe:Drosophila_2:1627301_s_at:278:595; Interrogation_Position=1434; Antisense; TGGGCTTTCCAAATTCACTGTTAAC
>probe:Drosophila_2:1627301_s_at:142:121; Interrogation_Position=983; Antisense; AGCGTCAGCGATCTCAATTTTAGTG

Paste this into a BLAST search page for me
TGAGTGTGCCTCAACGCAGACATTCCAACATGCTGGTGGTCTGCGAGGATCAGCCCTTCATTAAGTTCTTCGATCTGCCCTTGGTCAGTCCGAATAAGTCTAAGTCGCTCTGTGTGATCTTCGCAGATCTTCGCATTACTGGAGTCACAGGGAGTCACAGAACCCGGGCTTGAATGACAGATGGGCCGTCGTTAATCGCTAGAGGCAGGTCGCTCAATTCTGCGAAATTCTGCGACAACGTCCTTATTGACCGACCGGTGTTCCAAATTGCGATAGCGATACTGTTTCTGGCAACTTAAATGGGCTTTCCAAATTCACTGTTAACAGCGTCAGCGATCTCAATTTTAGTG

Full Affymetrix probeset data:

Annotations for 1627301_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime