FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627398_a_at:

>probe:Drosophila_2:1627398_a_at:117:323; Interrogation_Position=1030; Antisense; GCGCCCCAATGCAAAACGTTCGTAT
>probe:Drosophila_2:1627398_a_at:554:51; Interrogation_Position=1067; Antisense; ATGCGTCCGCCAAGCTATGGGACAT
>probe:Drosophila_2:1627398_a_at:553:149; Interrogation_Position=1088; Antisense; ACATCCGGGAGGGTGTCTGTAAACA
>probe:Drosophila_2:1627398_a_at:508:233; Interrogation_Position=1141; Antisense; AATGCGGTCACATTTTTCCCGAATG
>probe:Drosophila_2:1627398_a_at:104:411; Interrogation_Position=1192; Antisense; GACGCAACCTGTCGATTGTTCGATA
>probe:Drosophila_2:1627398_a_at:599:715; Interrogation_Position=1210; Antisense; TTCGATATCCGTGCCGATCAGGAGT
>probe:Drosophila_2:1627398_a_at:42:429; Interrogation_Position=1231; Antisense; GAGTTGGCCATGTATTCGCACGACA
>probe:Drosophila_2:1627398_a_at:631:271; Interrogation_Position=1269; Antisense; CATCACATCGGTGGCATTCTCGAAG
>probe:Drosophila_2:1627398_a_at:345:287; Interrogation_Position=1296; Antisense; CGGACGTCTGTTATTAGCGGGCTAC
>probe:Drosophila_2:1627398_a_at:39:331; Interrogation_Position=1312; Antisense; GCGGGCTACGATGATTTCAACTGCA
>probe:Drosophila_2:1627398_a_at:231:107; Interrogation_Position=1359; Antisense; AGAACGGTCTGGCATACTCGCTGGC
>probe:Drosophila_2:1627398_a_at:448:135; Interrogation_Position=1385; Antisense; ACGACAACCGTGTATCCTGTTTGGG
>probe:Drosophila_2:1627398_a_at:527:557; Interrogation_Position=1449; Antisense; GGACTCCTTCTTGCGTGTATGGAAC
>probe:Drosophila_2:1627398_a_at:319:441; Interrogation_Position=977; Antisense; TGCAGGTAACCTCGTTTTTGGGCCA

Paste this into a BLAST search page for me
GCGCCCCAATGCAAAACGTTCGTATATGCGTCCGCCAAGCTATGGGACATACATCCGGGAGGGTGTCTGTAAACAAATGCGGTCACATTTTTCCCGAATGGACGCAACCTGTCGATTGTTCGATATTCGATATCCGTGCCGATCAGGAGTGAGTTGGCCATGTATTCGCACGACACATCACATCGGTGGCATTCTCGAAGCGGACGTCTGTTATTAGCGGGCTACGCGGGCTACGATGATTTCAACTGCAAGAACGGTCTGGCATACTCGCTGGCACGACAACCGTGTATCCTGTTTGGGGGACTCCTTCTTGCGTGTATGGAACTGCAGGTAACCTCGTTTTTGGGCCA

Full Affymetrix probeset data:

Annotations for 1627398_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720