FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627452_a_at:

>probe:Drosophila_2:1627452_a_at:643:609; Interrogation_Position=4836; Antisense; TGAAACTCAAGGTGGGCCCGGCCGT
>probe:Drosophila_2:1627452_a_at:131:615; Interrogation_Position=4860; Antisense; TGAAGCTCTACTCCCTGATTCTGAA
>probe:Drosophila_2:1627452_a_at:503:603; Interrogation_Position=4875; Antisense; TGATTCTGAATCTGCGCATCGCGGT
>probe:Drosophila_2:1627452_a_at:242:331; Interrogation_Position=4895; Antisense; GCGGTCGTCTGCAAGTTTGATTCAA
>probe:Drosophila_2:1627452_a_at:592:421; Interrogation_Position=4936; Antisense; GAGCAATACTGCTGGTCCGATTCAG
>probe:Drosophila_2:1627452_a_at:542:543; Interrogation_Position=4969; Antisense; GGATACACCTGTTTCTGCGATAAAA
>probe:Drosophila_2:1627452_a_at:154:213; Interrogation_Position=5027; Antisense; AAGACGGATCACGACCAGGAGCTGT
>probe:Drosophila_2:1627452_a_at:604:443; Interrogation_Position=5099; Antisense; GATGACTTTCTCAGCGTTAAGCCGA
>probe:Drosophila_2:1627452_a_at:395:709; Interrogation_Position=5115; Antisense; TTAAGCCGAGCTGCCTGGTCATTGA
>probe:Drosophila_2:1627452_a_at:233:583; Interrogation_Position=5158; Antisense; TGGCGATTGTGAATCCGACGGCGAT
>probe:Drosophila_2:1627452_a_at:717:275; Interrogation_Position=5229; Antisense; CTTAGGACTCCGGATACCAGGCATC
>probe:Drosophila_2:1627452_a_at:396:215; Interrogation_Position=5275; Antisense; AAGATTATTTTGTTGCACCGGCCTC
>probe:Drosophila_2:1627452_a_at:169:289; Interrogation_Position=5299; Antisense; CGGCCCATTCGGGTATTATGTTTAT
>probe:Drosophila_2:1627452_a_at:221:601; Interrogation_Position=5363; Antisense; TGTTTGTTTTTCGATCCCTAATCCA

Paste this into a BLAST search page for me
TGAAACTCAAGGTGGGCCCGGCCGTTGAAGCTCTACTCCCTGATTCTGAATGATTCTGAATCTGCGCATCGCGGTGCGGTCGTCTGCAAGTTTGATTCAAGAGCAATACTGCTGGTCCGATTCAGGGATACACCTGTTTCTGCGATAAAAAAGACGGATCACGACCAGGAGCTGTGATGACTTTCTCAGCGTTAAGCCGATTAAGCCGAGCTGCCTGGTCATTGATGGCGATTGTGAATCCGACGGCGATCTTAGGACTCCGGATACCAGGCATCAAGATTATTTTGTTGCACCGGCCTCCGGCCCATTCGGGTATTATGTTTATTGTTTGTTTTTCGATCCCTAATCCA

Full Affymetrix probeset data:

Annotations for 1627452_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720