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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627527_s_at:

>probe:Drosophila_2:1627527_s_at:196:397; Interrogation_Position=1009; Antisense; GACAAGGCCAAATTGAATCGCAAGG
>probe:Drosophila_2:1627527_s_at:157:501; Interrogation_Position=1057; Antisense; GTCGTTAAATGCTTGTACTACTCAC
>probe:Drosophila_2:1627527_s_at:369:669; Interrogation_Position=1072; Antisense; TACTACTCACTGATGTGCTGCGACT
>probe:Drosophila_2:1627527_s_at:144:509; Interrogation_Position=1086; Antisense; GTGCTGCGACTGTACTATATCTTAA
>probe:Drosophila_2:1627527_s_at:679:629; Interrogation_Position=1116; Antisense; TCGCATCTTAAATACGGATCCGCGT
>probe:Drosophila_2:1627527_s_at:498:545; Interrogation_Position=1131; Antisense; GGATCCGCGTCCATGTAATATACCT
>probe:Drosophila_2:1627527_s_at:178:493; Interrogation_Position=1145; Antisense; GTAATATACCTCTCAGCCAACTATG
>probe:Drosophila_2:1627527_s_at:121:17; Interrogation_Position=1188; Antisense; ATTTTGTATACTTAGCGTACGCAGC
>probe:Drosophila_2:1627527_s_at:657:245; Interrogation_Position=820; Antisense; AATTCGATCGAAACCATTTCCAGTT
>probe:Drosophila_2:1627527_s_at:492:273; Interrogation_Position=834; Antisense; CATTTCCAGTTTAACCAGGTTTCAG
>probe:Drosophila_2:1627527_s_at:729:477; Interrogation_Position=852; Antisense; GTTTCAGGGAAACGCCACAGACTTC
>probe:Drosophila_2:1627527_s_at:593:133; Interrogation_Position=863; Antisense; ACGCCACAGACTTCGATTGGATCGA
>probe:Drosophila_2:1627527_s_at:532:593; Interrogation_Position=896; Antisense; TGGGACAGCGAAACACCAACGAACT
>probe:Drosophila_2:1627527_s_at:139:321; Interrogation_Position=967; Antisense; GCCGCCGACCAGTTGGATGCCAAAT

Paste this into a BLAST search page for me
GACAAGGCCAAATTGAATCGCAAGGGTCGTTAAATGCTTGTACTACTCACTACTACTCACTGATGTGCTGCGACTGTGCTGCGACTGTACTATATCTTAATCGCATCTTAAATACGGATCCGCGTGGATCCGCGTCCATGTAATATACCTGTAATATACCTCTCAGCCAACTATGATTTTGTATACTTAGCGTACGCAGCAATTCGATCGAAACCATTTCCAGTTCATTTCCAGTTTAACCAGGTTTCAGGTTTCAGGGAAACGCCACAGACTTCACGCCACAGACTTCGATTGGATCGATGGGACAGCGAAACACCAACGAACTGCCGCCGACCAGTTGGATGCCAAAT

Full Affymetrix probeset data:

Annotations for 1627527_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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