FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627550_a_at:

>probe:Drosophila_2:1627550_a_at:703:711; Interrogation_Position=4361; Antisense; TTCTTCTTCATTTTCACCGGCGACA
>probe:Drosophila_2:1627550_a_at:323:361; Interrogation_Position=4392; Antisense; GCAAGTCAGCAGGATCCTGCGGCTC
>probe:Drosophila_2:1627550_a_at:574:577; Interrogation_Position=4454; Antisense; GGCCATGGGCTCCAACGAATTTGCG
>probe:Drosophila_2:1627550_a_at:695:135; Interrogation_Position=4484; Antisense; ACGCAACTCCAGCTCGATATTGAAG
>probe:Drosophila_2:1627550_a_at:565:5; Interrogation_Position=4502; Antisense; ATTGAAGGACATCCTCAGCGACTCC
>probe:Drosophila_2:1627550_a_at:658:241; Interrogation_Position=4539; Antisense; AATAGTCGCGTCTTTATGTTGTCGT
>probe:Drosophila_2:1627550_a_at:104:601; Interrogation_Position=4607; Antisense; TGTAAACGTGCAATCGTGTCGCCCG
>probe:Drosophila_2:1627550_a_at:220:517; Interrogation_Position=4622; Antisense; GTGTCGCCCGTATTCGGAAACATAT
>probe:Drosophila_2:1627550_a_at:258:681; Interrogation_Position=4644; Antisense; TATGTCCCGCATATATCTCGCTATA
>probe:Drosophila_2:1627550_a_at:716:681; Interrogation_Position=4736; Antisense; TATGTGCAACACTAGCAACTTGTAA
>probe:Drosophila_2:1627550_a_at:400:253; Interrogation_Position=4773; Antisense; CAACTTGAACATGTCGAGGGCAGCA
>probe:Drosophila_2:1627550_a_at:212:675; Interrogation_Position=4806; Antisense; TAGAACCCAATGGTTTTGGCCAGTT
>probe:Drosophila_2:1627550_a_at:226:581; Interrogation_Position=4822; Antisense; TGGCCAGTTTTGCTTGCCTGTGACA
>probe:Drosophila_2:1627550_a_at:59:259; Interrogation_Position=4853; Antisense; CACAGCGGCCTTGCTAATGAGTAGC

Paste this into a BLAST search page for me
TTCTTCTTCATTTTCACCGGCGACAGCAAGTCAGCAGGATCCTGCGGCTCGGCCATGGGCTCCAACGAATTTGCGACGCAACTCCAGCTCGATATTGAAGATTGAAGGACATCCTCAGCGACTCCAATAGTCGCGTCTTTATGTTGTCGTTGTAAACGTGCAATCGTGTCGCCCGGTGTCGCCCGTATTCGGAAACATATTATGTCCCGCATATATCTCGCTATATATGTGCAACACTAGCAACTTGTAACAACTTGAACATGTCGAGGGCAGCATAGAACCCAATGGTTTTGGCCAGTTTGGCCAGTTTTGCTTGCCTGTGACACACAGCGGCCTTGCTAATGAGTAGC

Full Affymetrix probeset data:

Annotations for 1627550_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720