FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627623_s_at:

>probe:Drosophila_2:1627623_s_at:170:199; Interrogation_Position=1226; Antisense; AACGCAGACACTCCAGATGAATTCA
>probe:Drosophila_2:1627623_s_at:162:247; Interrogation_Position=1245; Antisense; AATTCATTGCCAGGTCGCGAGGACA
>probe:Drosophila_2:1627623_s_at:258:675; Interrogation_Position=1284; Antisense; TAGCACTACTAGCTCTTACCGATTT
>probe:Drosophila_2:1627623_s_at:176:631; Interrogation_Position=1309; Antisense; TCCCCAATTTCCGACTTTTCGATGT
>probe:Drosophila_2:1627623_s_at:8:121; Interrogation_Position=1374; Antisense; AGCTGAGGCCACAATTTCGATTCGA
>probe:Drosophila_2:1627623_s_at:80:719; Interrogation_Position=1389; Antisense; TTCGATTCGAGAACAATGTGCCCAA
>probe:Drosophila_2:1627623_s_at:537:477; Interrogation_Position=1450; Antisense; GTTTTAGACCATCATTACCATGCAT
>probe:Drosophila_2:1627623_s_at:711:411; Interrogation_Position=1503; Antisense; GACCCATTCATATTTCCAGCATTTT
>probe:Drosophila_2:1627623_s_at:502:523; Interrogation_Position=1587; Antisense; GGGCCTGTGTGTGTATGCATAGCAA
>probe:Drosophila_2:1627623_s_at:697:109; Interrogation_Position=1607; Antisense; AGCAACGCTCTTGTGTGAGGTTTTC
>probe:Drosophila_2:1627623_s_at:81:113; Interrogation_Position=1670; Antisense; AGCACGCGGCAGTCGAAAACTTGTT
>probe:Drosophila_2:1627623_s_at:233:627; Interrogation_Position=1720; Antisense; TCCAGATGGTCAGAAGGCTCCTTCG
>probe:Drosophila_2:1627623_s_at:93:569; Interrogation_Position=1744; Antisense; GGCAGGAACTATGACCCGTACGCAA
>probe:Drosophila_2:1627623_s_at:473:133; Interrogation_Position=1757; Antisense; ACCCGTACGCAACTTCCAAATTATG

Paste this into a BLAST search page for me
AACGCAGACACTCCAGATGAATTCAAATTCATTGCCAGGTCGCGAGGACATAGCACTACTAGCTCTTACCGATTTTCCCCAATTTCCGACTTTTCGATGTAGCTGAGGCCACAATTTCGATTCGATTCGATTCGAGAACAATGTGCCCAAGTTTTAGACCATCATTACCATGCATGACCCATTCATATTTCCAGCATTTTGGGCCTGTGTGTGTATGCATAGCAAAGCAACGCTCTTGTGTGAGGTTTTCAGCACGCGGCAGTCGAAAACTTGTTTCCAGATGGTCAGAAGGCTCCTTCGGGCAGGAACTATGACCCGTACGCAAACCCGTACGCAACTTCCAAATTATG

Full Affymetrix probeset data:

Annotations for 1627623_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720