FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627641_s_at:

>probe:Drosophila_2:1627641_s_at:281:673; Interrogation_Position=2857; Antisense; TACCTCTTGGCTGTGTTGCCATCGG
>probe:Drosophila_2:1627641_s_at:388:41; Interrogation_Position=2877; Antisense; ATCGGCCTGCTCATATATTTTCTTT
>probe:Drosophila_2:1627641_s_at:464:695; Interrogation_Position=2899; Antisense; TTTCCAGTCGAATTTAAGCGCCATT
>probe:Drosophila_2:1627641_s_at:344:205; Interrogation_Position=2914; Antisense; AAGCGCCATTCTTTTAGCTAATGAG
>probe:Drosophila_2:1627641_s_at:241:559; Interrogation_Position=2938; Antisense; GGAAAACTCGCGCATTAAAAGCTTT
>probe:Drosophila_2:1627641_s_at:599:515; Interrogation_Position=2979; Antisense; GTGTACACTGGGATGACAGCATATT
>probe:Drosophila_2:1627641_s_at:66:677; Interrogation_Position=3004; Antisense; TAGTTAATGCTTGCGTTGTCGTCAA
>probe:Drosophila_2:1627641_s_at:358:623; Interrogation_Position=3015; Antisense; TGCGTTGTCGTCAAGCTTTATTAAA
>probe:Drosophila_2:1627641_s_at:389:279; Interrogation_Position=3133; Antisense; CTGCTTTAAGCATGGAACTCGGTTC
>probe:Drosophila_2:1627641_s_at:211:481; Interrogation_Position=3230; Antisense; GTTTGTATACATAAGCCGACTGAAA
>probe:Drosophila_2:1627641_s_at:15:673; Interrogation_Position=3334; Antisense; TAGGTGTGGCACGTAAGTTTTAACA
>probe:Drosophila_2:1627641_s_at:359:179; Interrogation_Position=3355; Antisense; AACAAATGGCTTTCATTCGGGAAAT
>probe:Drosophila_2:1627641_s_at:654:55; Interrogation_Position=3378; Antisense; ATGAGCATTCAATATCCGCCGATAC
>probe:Drosophila_2:1627641_s_at:396:241; Interrogation_Position=3388; Antisense; AATATCCGCCGATACCTACCAATAT

Paste this into a BLAST search page for me
TACCTCTTGGCTGTGTTGCCATCGGATCGGCCTGCTCATATATTTTCTTTTTTCCAGTCGAATTTAAGCGCCATTAAGCGCCATTCTTTTAGCTAATGAGGGAAAACTCGCGCATTAAAAGCTTTGTGTACACTGGGATGACAGCATATTTAGTTAATGCTTGCGTTGTCGTCAATGCGTTGTCGTCAAGCTTTATTAAACTGCTTTAAGCATGGAACTCGGTTCGTTTGTATACATAAGCCGACTGAAATAGGTGTGGCACGTAAGTTTTAACAAACAAATGGCTTTCATTCGGGAAATATGAGCATTCAATATCCGCCGATACAATATCCGCCGATACCTACCAATAT

Full Affymetrix probeset data:

Annotations for 1627641_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720