Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627642_at:

>probe:Drosophila_2:1627642_at:23:119; Interrogation_Position=100; Antisense; AGCTCAGGGCTTTTTCGACAGTTAC
>probe:Drosophila_2:1627642_at:285:217; Interrogation_Position=127; Antisense; AAGTCCAAAGGAGTCAGCCGGTCTG
>probe:Drosophila_2:1627642_at:323:641; Interrogation_Position=148; Antisense; TCTGGCCACTCTCTGTCAAGAAATT
>probe:Drosophila_2:1627642_at:537:443; Interrogation_Position=185; Antisense; GATGACTTTGTGCATCTGGCAGATA
>probe:Drosophila_2:1627642_at:243:389; Interrogation_Position=223; Antisense; GAAACTGACGGTGAACGACTCCCTG
>probe:Drosophila_2:1627642_at:684:483; Interrogation_Position=250; Antisense; GTATCTGCAGATCAGTTGCCATGTG
>probe:Drosophila_2:1627642_at:405:441; Interrogation_Position=275; Antisense; GATGATCTTCCAGAGGGCTACGAGC
>probe:Drosophila_2:1627642_at:462:119; Interrogation_Position=297; Antisense; AGCGGAGACTGAAACCCGTCGACTA
>probe:Drosophila_2:1627642_at:80:545; Interrogation_Position=327; Antisense; GGAGTTTCTTCCTCAACCAACGGAT
>probe:Drosophila_2:1627642_at:437:49; Interrogation_Position=350; Antisense; ATGCCGAAGCCTTTGAAGCGCCAGT
>probe:Drosophila_2:1627642_at:344:585; Interrogation_Position=374; Antisense; TGGAATTTCCGAGTGCCCACAGACG
>probe:Drosophila_2:1627642_at:434:369; Interrogation_Position=403; Antisense; GAATGGACTCAGTCTGCTGACTTGA
>probe:Drosophila_2:1627642_at:144:615; Interrogation_Position=48; Antisense; TGAATCCAAATTCACGGTGCCTCGC
>probe:Drosophila_2:1627642_at:485:687; Interrogation_Position=78; Antisense; TATTCGTTGCGTTATCCTTTCTAGC

Paste this into a BLAST search page for me
AGCTCAGGGCTTTTTCGACAGTTACAAGTCCAAAGGAGTCAGCCGGTCTGTCTGGCCACTCTCTGTCAAGAAATTGATGACTTTGTGCATCTGGCAGATAGAAACTGACGGTGAACGACTCCCTGGTATCTGCAGATCAGTTGCCATGTGGATGATCTTCCAGAGGGCTACGAGCAGCGGAGACTGAAACCCGTCGACTAGGAGTTTCTTCCTCAACCAACGGATATGCCGAAGCCTTTGAAGCGCCAGTTGGAATTTCCGAGTGCCCACAGACGGAATGGACTCAGTCTGCTGACTTGATGAATCCAAATTCACGGTGCCTCGCTATTCGTTGCGTTATCCTTTCTAGC

Full Affymetrix probeset data:

Annotations for 1627642_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime