FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627651_a_at:

>probe:Drosophila_2:1627651_a_at:219:197; Interrogation_Position=4726; Antisense; AACGGAATTCGCAAAAGCGCCGCCA
>probe:Drosophila_2:1627651_a_at:358:175; Interrogation_Position=4762; Antisense; AAAGCCAAAGGTGCTGCCCATCAAG
>probe:Drosophila_2:1627651_a_at:456:125; Interrogation_Position=4809; Antisense; AGCCGACGGGCAACTATTGCAACAA
>probe:Drosophila_2:1627651_a_at:112:379; Interrogation_Position=4871; Antisense; GAAGCCTCCAAACCTGGAACGTTTG
>probe:Drosophila_2:1627651_a_at:712:479; Interrogation_Position=4891; Antisense; GTTTGCGAGCAAAATACCACTGGAT
>probe:Drosophila_2:1627651_a_at:31:323; Interrogation_Position=4969; Antisense; GCCCAGCAGCAGCTTTGTGTGATAT
>probe:Drosophila_2:1627651_a_at:554:25; Interrogation_Position=4992; Antisense; ATAAGTGCGCCCACGTACTTGAAAT
>probe:Drosophila_2:1627651_a_at:680:227; Interrogation_Position=5014; Antisense; AATGGCTTTACTGATCTTGCTTGTA
>probe:Drosophila_2:1627651_a_at:168:631; Interrogation_Position=5071; Antisense; TCCTATTCCCTATTCTCTAAATGTC
>probe:Drosophila_2:1627651_a_at:315:505; Interrogation_Position=5093; Antisense; GTCCAAACAATCCATGACGAGCTTT
>probe:Drosophila_2:1627651_a_at:562:409; Interrogation_Position=5108; Antisense; GACGAGCTTTTGTATGTTATCTACT
>probe:Drosophila_2:1627651_a_at:22:477; Interrogation_Position=5123; Antisense; GTTATCTACTGAGTGATCGCCTGTA
>probe:Drosophila_2:1627651_a_at:133:243; Interrogation_Position=5234; Antisense; AATATATGTTCCTAGGTGGCTTACC
>probe:Drosophila_2:1627651_a_at:478:431; Interrogation_Position=5285; Antisense; GAGTCTACATTTTCCATTCATCTTA

Paste this into a BLAST search page for me
AACGGAATTCGCAAAAGCGCCGCCAAAAGCCAAAGGTGCTGCCCATCAAGAGCCGACGGGCAACTATTGCAACAAGAAGCCTCCAAACCTGGAACGTTTGGTTTGCGAGCAAAATACCACTGGATGCCCAGCAGCAGCTTTGTGTGATATATAAGTGCGCCCACGTACTTGAAATAATGGCTTTACTGATCTTGCTTGTATCCTATTCCCTATTCTCTAAATGTCGTCCAAACAATCCATGACGAGCTTTGACGAGCTTTTGTATGTTATCTACTGTTATCTACTGAGTGATCGCCTGTAAATATATGTTCCTAGGTGGCTTACCGAGTCTACATTTTCCATTCATCTTA

Full Affymetrix probeset data:

Annotations for 1627651_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720