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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627658_s_at:

>probe:Drosophila_2:1627658_s_at:153:71; Interrogation_Position=1044; Antisense; AGGAACGAGGGACCGCAGTACTTCT
>probe:Drosophila_2:1627658_s_at:490:265; Interrogation_Position=1059; Antisense; CAGTACTTCTTTCGCGGTCTAAACT
>probe:Drosophila_2:1627658_s_at:168:605; Interrogation_Position=1090; Antisense; TGATCCGGGCTTTTCCGATGAACGC
>probe:Drosophila_2:1627658_s_at:567:305; Interrogation_Position=1135; Antisense; CCTGGGTACTGGACATCTGCAATGC
>probe:Drosophila_2:1627658_s_at:418:311; Interrogation_Position=1158; Antisense; GCCAAGGGCGGCATGGATTCCGTAA
>probe:Drosophila_2:1627658_s_at:176:493; Interrogation_Position=1179; Antisense; GTAATGCATTCCGATCAGCCACTGA
>probe:Drosophila_2:1627658_s_at:120:235; Interrogation_Position=1293; Antisense; AATGCCATGTCCCATCAGTATGTGT
>probe:Drosophila_2:1627658_s_at:395:63; Interrogation_Position=1312; Antisense; ATGTGTCCACGCCAAAGGATGTCGT
>probe:Drosophila_2:1627658_s_at:647:75; Interrogation_Position=1327; Antisense; AGGATGTCGTTCACAGCCATTACAC
>probe:Drosophila_2:1627658_s_at:252:429; Interrogation_Position=1352; Antisense; GAGTAGCACAATCAACATTCCCAAA
>probe:Drosophila_2:1627658_s_at:700:207; Interrogation_Position=1384; Antisense; AAGCACGTTTAGCATCCGATTGTAA
>probe:Drosophila_2:1627658_s_at:123:505; Interrogation_Position=851; Antisense; GTCCTTCGAGTACCTTATGCGTCAA
>probe:Drosophila_2:1627658_s_at:189:623; Interrogation_Position=893; Antisense; TGCGTACACTCTAATGGCCGGCGGA
>probe:Drosophila_2:1627658_s_at:364:511; Interrogation_Position=963; Antisense; GTGAAGACCCACATGCAGGCCGATG

Paste this into a BLAST search page for me
AGGAACGAGGGACCGCAGTACTTCTCAGTACTTCTTTCGCGGTCTAAACTTGATCCGGGCTTTTCCGATGAACGCCCTGGGTACTGGACATCTGCAATGCGCCAAGGGCGGCATGGATTCCGTAAGTAATGCATTCCGATCAGCCACTGAAATGCCATGTCCCATCAGTATGTGTATGTGTCCACGCCAAAGGATGTCGTAGGATGTCGTTCACAGCCATTACACGAGTAGCACAATCAACATTCCCAAAAAGCACGTTTAGCATCCGATTGTAAGTCCTTCGAGTACCTTATGCGTCAATGCGTACACTCTAATGGCCGGCGGAGTGAAGACCCACATGCAGGCCGATG

Full Affymetrix probeset data:

Annotations for 1627658_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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