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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627679_at:

>probe:Drosophila_2:1627679_at:236:319; Interrogation_Position=517; Antisense; GCTCTTCTTCGTATTCCGGAAACAA
>probe:Drosophila_2:1627679_at:516:675; Interrogation_Position=576; Antisense; TAGCATTTGCAAGCTCCTGAGAGCC
>probe:Drosophila_2:1627679_at:482:417; Interrogation_Position=616; Antisense; GAGCGGGTTTTCGTGATGGCCCCTT
>probe:Drosophila_2:1627679_at:372:359; Interrogation_Position=644; Antisense; GCAACTACGTGGTTTTCCGGTATCA
>probe:Drosophila_2:1627679_at:569:55; Interrogation_Position=677; Antisense; ATGACTTTATTTACTTCCTGTTTGA
>probe:Drosophila_2:1627679_at:4:307; Interrogation_Position=693; Antisense; CCTGTTTGATGGATGCACCTGCGAT
>probe:Drosophila_2:1627679_at:621:241; Interrogation_Position=721; Antisense; AATAGGTTCCGCTATCTAGACCTCA
>probe:Drosophila_2:1627679_at:438:685; Interrogation_Position=733; Antisense; TATCTAGACCTCAGCTGCGGAACTG
>probe:Drosophila_2:1627679_at:535:193; Interrogation_Position=753; Antisense; AACTGCTGGATTTCTTTTCTTCGAT
>probe:Drosophila_2:1627679_at:487:211; Interrogation_Position=817; Antisense; AAGACGCGTCTATATCTGGAGAATC
>probe:Drosophila_2:1627679_at:296:485; Interrogation_Position=876; Antisense; GTATGGCGCTGTAACGTACACCCAA
>probe:Drosophila_2:1627679_at:609:327; Interrogation_Position=915; Antisense; GCGATTCGCTTAAATAGGTCCCATA
>probe:Drosophila_2:1627679_at:42:435; Interrogation_Position=955; Antisense; GAGGGCAACGCATACACAACGAGGA
>probe:Drosophila_2:1627679_at:260:143; Interrogation_Position=984; Antisense; ACTGGACGACAAGCTTTGCTCTAAA

Paste this into a BLAST search page for me
GCTCTTCTTCGTATTCCGGAAACAATAGCATTTGCAAGCTCCTGAGAGCCGAGCGGGTTTTCGTGATGGCCCCTTGCAACTACGTGGTTTTCCGGTATCAATGACTTTATTTACTTCCTGTTTGACCTGTTTGATGGATGCACCTGCGATAATAGGTTCCGCTATCTAGACCTCATATCTAGACCTCAGCTGCGGAACTGAACTGCTGGATTTCTTTTCTTCGATAAGACGCGTCTATATCTGGAGAATCGTATGGCGCTGTAACGTACACCCAAGCGATTCGCTTAAATAGGTCCCATAGAGGGCAACGCATACACAACGAGGAACTGGACGACAAGCTTTGCTCTAAA

Full Affymetrix probeset data:

Annotations for 1627679_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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