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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627704_a_at:

>probe:Drosophila_2:1627704_a_at:196:705; Interrogation_Position=1816; Antisense; TTATGAGTAAATCCCCTCTAGCCTA
>probe:Drosophila_2:1627704_a_at:476:675; Interrogation_Position=1839; Antisense; TAGCGTAGTCTAGCCTGTTCAGTCT
>probe:Drosophila_2:1627704_a_at:528:87; Interrogation_Position=1859; Antisense; AGTCTCAGCGGCAGCTTCGGGCGAT
>probe:Drosophila_2:1627704_a_at:333:321; Interrogation_Position=1896; Antisense; GCGCTAACTGGCCTTGGAATGCCGT
>probe:Drosophila_2:1627704_a_at:66:595; Interrogation_Position=1925; Antisense; TGGGCCACTGCGTCATAGTCATATT
>probe:Drosophila_2:1627704_a_at:109:425; Interrogation_Position=2015; Antisense; GAGAGCTCATACAATTCATCCATTA
>probe:Drosophila_2:1627704_a_at:492:89; Interrogation_Position=2041; Antisense; AGTACGCCTAAGTTTGTGTCTTAAG
>probe:Drosophila_2:1627704_a_at:138:97; Interrogation_Position=2078; Antisense; AGATTTGTATTATTGCGCGCGATGC
>probe:Drosophila_2:1627704_a_at:548:299; Interrogation_Position=2093; Antisense; CGCGCGATGCGATCACTTTCAAAAG
>probe:Drosophila_2:1627704_a_at:267:677; Interrogation_Position=2128; Antisense; TAGACCATACGCTCAAAATCACTTA
>probe:Drosophila_2:1627704_a_at:260:709; Interrogation_Position=2178; Antisense; TTAAATTCGGAGCAGCCGCAGCGAC
>probe:Drosophila_2:1627704_a_at:667:349; Interrogation_Position=2195; Antisense; GCAGCGACCGCAAACCTAGTTTAAG
>probe:Drosophila_2:1627704_a_at:139:355; Interrogation_Position=2225; Antisense; GCACGTAGTTAGTTGCCTAAGCGAA
>probe:Drosophila_2:1627704_a_at:392:325; Interrogation_Position=2245; Antisense; GCGAACGCATAAGTCATTAGTACCA

Paste this into a BLAST search page for me
TTATGAGTAAATCCCCTCTAGCCTATAGCGTAGTCTAGCCTGTTCAGTCTAGTCTCAGCGGCAGCTTCGGGCGATGCGCTAACTGGCCTTGGAATGCCGTTGGGCCACTGCGTCATAGTCATATTGAGAGCTCATACAATTCATCCATTAAGTACGCCTAAGTTTGTGTCTTAAGAGATTTGTATTATTGCGCGCGATGCCGCGCGATGCGATCACTTTCAAAAGTAGACCATACGCTCAAAATCACTTATTAAATTCGGAGCAGCCGCAGCGACGCAGCGACCGCAAACCTAGTTTAAGGCACGTAGTTAGTTGCCTAAGCGAAGCGAACGCATAAGTCATTAGTACCA

Full Affymetrix probeset data:

Annotations for 1627704_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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