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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627742_at:

>probe:Drosophila_2:1627742_at:271:165; Interrogation_Position=1463; Antisense; AAATCTTCAAATCAAACACTGTATT
>probe:Drosophila_2:1627742_at:92:143; Interrogation_Position=1479; Antisense; CACTGTATTTACTTTAATTTAGGCT
>probe:Drosophila_2:1627742_at:275:679; Interrogation_Position=1498; Antisense; TAGGCTTCTATTTTAGTTACATATG
>probe:Drosophila_2:1627742_at:102:15; Interrogation_Position=1551; Antisense; ATTTTGTATTATTAGCGCATTTCCC
>probe:Drosophila_2:1627742_at:604:481; Interrogation_Position=1556; Antisense; GTATTATTAGCGCATTTCCCTTGCT
>probe:Drosophila_2:1627742_at:616:13; Interrogation_Position=1561; Antisense; ATTAGCGCATTTCCCTTGCTCGAAG
>probe:Drosophila_2:1627742_at:75:19; Interrogation_Position=1569; Antisense; ATTTCCCTTGCTCGAAGCTCGGACA
>probe:Drosophila_2:1627742_at:9:339; Interrogation_Position=1578; Antisense; GCTCGAAGCTCGGACATTTTCGATA
>probe:Drosophila_2:1627742_at:106:641; Interrogation_Position=1587; Antisense; TCGGACATTTTCGATAATTTTACAT
>probe:Drosophila_2:1627742_at:633:243; Interrogation_Position=1602; Antisense; AATTTTACATGTGCATCTTCGCTGT
>probe:Drosophila_2:1627742_at:632:269; Interrogation_Position=1609; Antisense; CATGTGCATCTTCGCTGTAAATATA
>probe:Drosophila_2:1627742_at:721:271; Interrogation_Position=1615; Antisense; CATCTTCGCTGTAAATATATGCATT
>probe:Drosophila_2:1627742_at:632:483; Interrogation_Position=1642; Antisense; GTAGCATATGCTACTGAATACAGAA
>probe:Drosophila_2:1627742_at:355:237; Interrogation_Position=1689; Antisense; CAATAAACTGTTTGTTGGAAATCTC

Paste this into a BLAST search page for me
AAATCTTCAAATCAAACACTGTATTCACTGTATTTACTTTAATTTAGGCTTAGGCTTCTATTTTAGTTACATATGATTTTGTATTATTAGCGCATTTCCCGTATTATTAGCGCATTTCCCTTGCTATTAGCGCATTTCCCTTGCTCGAAGATTTCCCTTGCTCGAAGCTCGGACAGCTCGAAGCTCGGACATTTTCGATATCGGACATTTTCGATAATTTTACATAATTTTACATGTGCATCTTCGCTGTCATGTGCATCTTCGCTGTAAATATACATCTTCGCTGTAAATATATGCATTGTAGCATATGCTACTGAATACAGAACAATAAACTGTTTGTTGGAAATCTC

Full Affymetrix probeset data:

Annotations for 1627742_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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