FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627793_s_at:

>probe:Drosophila_2:1627793_s_at:728:109; Interrogation_Position=1585; Antisense; AGCACATACGTGACTTTGGCCTGGG
>probe:Drosophila_2:1627793_s_at:197:687; Interrogation_Position=1600; Antisense; TTGGCCTGGGCCACGAACATTTCTG
>probe:Drosophila_2:1627793_s_at:13:191; Interrogation_Position=1615; Antisense; AACATTTCTGGATTTCCGGCACGGA
>probe:Drosophila_2:1627793_s_at:465:137; Interrogation_Position=1648; Antisense; ACGAGGGCAACTTCTTCTGGATGGC
>probe:Drosophila_2:1627793_s_at:255:195; Interrogation_Position=1752; Antisense; AACTGCCTAGAGCTGTGGAACCGCG
>probe:Drosophila_2:1627793_s_at:580:201; Interrogation_Position=1770; Antisense; AACCGCGATGGCAAGGGCCTCAAGT
>probe:Drosophila_2:1627793_s_at:279:221; Interrogation_Position=1791; Antisense; AAGTGGAACGACTCGCCGTGCAGCT
>probe:Drosophila_2:1627793_s_at:517:103; Interrogation_Position=1819; Antisense; AGACCTACTTCGTCTGCGAGGTGCA
>probe:Drosophila_2:1627793_s_at:249:273; Interrogation_Position=1905; Antisense; CATTCACATCCACATGCGACTAAGT
>probe:Drosophila_2:1627793_s_at:286:467; Interrogation_Position=1939; Antisense; GTTGGCTCCAACTGGTCTTAGCTGG
>probe:Drosophila_2:1627793_s_at:160:707; Interrogation_Position=1956; Antisense; TTAGCTGGCGATTACTCCGGTGAAT
>probe:Drosophila_2:1627793_s_at:608:471; Interrogation_Position=1987; Antisense; GTTCATTTCGGACACTCATTGCTGA
>probe:Drosophila_2:1627793_s_at:722:661; Interrogation_Position=2018; Antisense; TAAATTCGCGTATTCTTAGCTTAGA
>probe:Drosophila_2:1627793_s_at:711:545; Interrogation_Position=2102; Antisense; GGATCGCTTGTATTTTCTCATGTAA

Paste this into a BLAST search page for me
AGCACATACGTGACTTTGGCCTGGGTTGGCCTGGGCCACGAACATTTCTGAACATTTCTGGATTTCCGGCACGGAACGAGGGCAACTTCTTCTGGATGGCAACTGCCTAGAGCTGTGGAACCGCGAACCGCGATGGCAAGGGCCTCAAGTAAGTGGAACGACTCGCCGTGCAGCTAGACCTACTTCGTCTGCGAGGTGCACATTCACATCCACATGCGACTAAGTGTTGGCTCCAACTGGTCTTAGCTGGTTAGCTGGCGATTACTCCGGTGAATGTTCATTTCGGACACTCATTGCTGATAAATTCGCGTATTCTTAGCTTAGAGGATCGCTTGTATTTTCTCATGTAA

Full Affymetrix probeset data:

Annotations for 1627793_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720