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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627802_s_at:

>probe:Drosophila_2:1627802_s_at:18:17; Interrogation_Position=4031; Antisense; ATTTACACTATACACGTACGATCAA
>probe:Drosophila_2:1627802_s_at:254:489; Interrogation_Position=4046; Antisense; GTACGATCAACTTTTACACATCTAT
>probe:Drosophila_2:1627802_s_at:607:423; Interrogation_Position=4076; Antisense; GAGAAAACACTCGAGATCTACGCGT
>probe:Drosophila_2:1627802_s_at:240:145; Interrogation_Position=4084; Antisense; ACTCGAGATCTACGCGTACATATTG
>probe:Drosophila_2:1627802_s_at:503:489; Interrogation_Position=4099; Antisense; GTACATATTGATTTCAGGACTCCAT
>probe:Drosophila_2:1627802_s_at:411:557; Interrogation_Position=4115; Antisense; GGACTCCATGAGATATGTACATATA
>probe:Drosophila_2:1627802_s_at:285:651; Interrogation_Position=4144; Antisense; TCAAACAAACTGTATGCGGCAGGGT
>probe:Drosophila_2:1627802_s_at:678:595; Interrogation_Position=4158; Antisense; TGCGGCAGGGTAAACTAATCTGGCA
>probe:Drosophila_2:1627802_s_at:624:473; Interrogation_Position=4289; Antisense; GTTAAACTAATAATCGCACACTAGA
>probe:Drosophila_2:1627802_s_at:478:157; Interrogation_Position=4330; Antisense; ACACACGGTGGATATTCAGAACCAG
>probe:Drosophila_2:1627802_s_at:657:647; Interrogation_Position=4345; Antisense; TCAGAACCAGAGTTTGGCGAAATTT
>probe:Drosophila_2:1627802_s_at:131:325; Interrogation_Position=4361; Antisense; GCGAAATTTCGAGCCAATCGCAAAT
>probe:Drosophila_2:1627802_s_at:417:89; Interrogation_Position=4459; Antisense; AGTCAAGCATAATGATACTCCTAAA
>probe:Drosophila_2:1627802_s_at:505:207; Interrogation_Position=4500; Antisense; AAGCATACCTACATATTTGCAAAAT

Paste this into a BLAST search page for me
ATTTACACTATACACGTACGATCAAGTACGATCAACTTTTACACATCTATGAGAAAACACTCGAGATCTACGCGTACTCGAGATCTACGCGTACATATTGGTACATATTGATTTCAGGACTCCATGGACTCCATGAGATATGTACATATATCAAACAAACTGTATGCGGCAGGGTTGCGGCAGGGTAAACTAATCTGGCAGTTAAACTAATAATCGCACACTAGAACACACGGTGGATATTCAGAACCAGTCAGAACCAGAGTTTGGCGAAATTTGCGAAATTTCGAGCCAATCGCAAATAGTCAAGCATAATGATACTCCTAAAAAGCATACCTACATATTTGCAAAAT

Full Affymetrix probeset data:

Annotations for 1627802_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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