Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627821_s_at:

>probe:Drosophila_2:1627821_s_at:145:197; Interrogation_Position=2106; Antisense; AACGGTACTGGTGTTCAGTTATACA
>probe:Drosophila_2:1627821_s_at:198:515; Interrogation_Position=2116; Antisense; GTGTTCAGTTATACATCTTATGGGA
>probe:Drosophila_2:1627821_s_at:279:689; Interrogation_Position=2174; Antisense; TATTCGCAAGATAGATATCGGTCAA
>probe:Drosophila_2:1627821_s_at:515:243; Interrogation_Position=2358; Antisense; AATATTCTTTATTCGCATACGGTGC
>probe:Drosophila_2:1627821_s_at:471:641; Interrogation_Position=2363; Antisense; TCTTTATTCGCATACGGTGCCGTAT
>probe:Drosophila_2:1627821_s_at:58:671; Interrogation_Position=2375; Antisense; TACGGTGCCGTATGATAGACATGTA
>probe:Drosophila_2:1627821_s_at:716:463; Interrogation_Position=2419; Antisense; GATTGCATTAGCACAATAAACCAGA
>probe:Drosophila_2:1627821_s_at:650:185; Interrogation_Position=2471; Antisense; AACAAATTAGCCAACCATTGCCGGA
>probe:Drosophila_2:1627821_s_at:364:13; Interrogation_Position=2476; Antisense; ATTAGCCAACCATTGCCGGAAGGAG
>probe:Drosophila_2:1627821_s_at:300:129; Interrogation_Position=2484; Antisense; ACCATTGCCGGAAGGAGCGTCAACT
>probe:Drosophila_2:1627821_s_at:454:75; Interrogation_Position=2496; Antisense; AGGAGCGTCAACTGCGAGAACACAA
>probe:Drosophila_2:1627821_s_at:47:495; Interrogation_Position=2502; Antisense; GTCAACTGCGAGAACACAAATTATG
>probe:Drosophila_2:1627821_s_at:576:185; Interrogation_Position=2611; Antisense; AACAACCCACCTTGAAATTACATAT
>probe:Drosophila_2:1627821_s_at:421:151; Interrogation_Position=2630; Antisense; ACATATTTGTTATATACCTGTTAAA

Paste this into a BLAST search page for me
AACGGTACTGGTGTTCAGTTATACAGTGTTCAGTTATACATCTTATGGGATATTCGCAAGATAGATATCGGTCAAAATATTCTTTATTCGCATACGGTGCTCTTTATTCGCATACGGTGCCGTATTACGGTGCCGTATGATAGACATGTAGATTGCATTAGCACAATAAACCAGAAACAAATTAGCCAACCATTGCCGGAATTAGCCAACCATTGCCGGAAGGAGACCATTGCCGGAAGGAGCGTCAACTAGGAGCGTCAACTGCGAGAACACAAGTCAACTGCGAGAACACAAATTATGAACAACCCACCTTGAAATTACATATACATATTTGTTATATACCTGTTAAA

Full Affymetrix probeset data:

Annotations for 1627821_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime