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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627894_s_at:

>probe:Drosophila_2:1627894_s_at:180:643; Interrogation_Position=1600; Antisense; TCTCCTCCCAGGACGTGATGGTGGT
>probe:Drosophila_2:1627894_s_at:235:75; Interrogation_Position=1663; Antisense; AGGACGAGCGGCTGATCACCCGGCT
>probe:Drosophila_2:1627894_s_at:169:455; Interrogation_Position=1676; Antisense; GATCACCCGGCTAGAGAACACGCAA
>probe:Drosophila_2:1627894_s_at:24:385; Interrogation_Position=1691; Antisense; GAACACGCAATACGACGGAACCAAT
>probe:Drosophila_2:1627894_s_at:33:355; Interrogation_Position=1724; Antisense; GCACGATAATCACACCGGCTTTGGA
>probe:Drosophila_2:1627894_s_at:32:25; Interrogation_Position=1764; Antisense; ATATCCGGCTCGAATCCGTGGAGCA
>probe:Drosophila_2:1627894_s_at:104:593; Interrogation_Position=1820; Antisense; TGGGAACGGAGCTGCCCCGCAGAAC
>probe:Drosophila_2:1627894_s_at:156:387; Interrogation_Position=1841; Antisense; GAACAACGCGAATATATCTGACATA
>probe:Drosophila_2:1627894_s_at:270:173; Interrogation_Position=1871; Antisense; AAAGAGCCCCATTGTATCGCAATAG
>probe:Drosophila_2:1627894_s_at:131:3; Interrogation_Position=2026; Antisense; ATTGTACCTTAAGTCGTCTACTCTA
>probe:Drosophila_2:1627894_s_at:475:291; Interrogation_Position=2040; Antisense; CGTCTACTCTACACACTATCTATTA
>probe:Drosophila_2:1627894_s_at:128:131; Interrogation_Position=2076; Antisense; ACCGTAGGATACTTCTGTTCTTGTC
>probe:Drosophila_2:1627894_s_at:23:473; Interrogation_Position=2092; Antisense; GTTCTTGTCTTGACTGCCTTGCAAA
>probe:Drosophila_2:1627894_s_at:336:401; Interrogation_Position=2103; Antisense; GACTGCCTTGCAAAGTACTTAATGT

Paste this into a BLAST search page for me
TCTCCTCCCAGGACGTGATGGTGGTAGGACGAGCGGCTGATCACCCGGCTGATCACCCGGCTAGAGAACACGCAAGAACACGCAATACGACGGAACCAATGCACGATAATCACACCGGCTTTGGAATATCCGGCTCGAATCCGTGGAGCATGGGAACGGAGCTGCCCCGCAGAACGAACAACGCGAATATATCTGACATAAAAGAGCCCCATTGTATCGCAATAGATTGTACCTTAAGTCGTCTACTCTACGTCTACTCTACACACTATCTATTAACCGTAGGATACTTCTGTTCTTGTCGTTCTTGTCTTGACTGCCTTGCAAAGACTGCCTTGCAAAGTACTTAATGT

Full Affymetrix probeset data:

Annotations for 1627894_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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