FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627910_s_at:

>probe:Drosophila_2:1627910_s_at:634:533; Interrogation_Position=1832; Antisense; GGTGGTGCGCCAAAAGAGCTCCGAC
>probe:Drosophila_2:1627910_s_at:404:213; Interrogation_Position=1845; Antisense; AAGAGCTCCGACGAGGTGCTTCTGA
>probe:Drosophila_2:1627910_s_at:729:41; Interrogation_Position=1869; Antisense; ATCGGAGCTGGAATCACTTTGTACG
>probe:Drosophila_2:1627910_s_at:148:109; Interrogation_Position=1921; Antisense; AGAAGAACTGCATCACCGTCCGTGT
>probe:Drosophila_2:1627910_s_at:264:595; Interrogation_Position=1943; Antisense; TGTGATCGATCCGTTCACCGTGAAG
>probe:Drosophila_2:1627910_s_at:88:615; Interrogation_Position=1963; Antisense; TGAAGCCATTGGACGCCGAGCTGAT
>probe:Drosophila_2:1627910_s_at:152:615; Interrogation_Position=2060; Antisense; TGAAGCTGTGCTGAGTGCCCTGGCT
>probe:Drosophila_2:1627910_s_at:116:583; Interrogation_Position=2084; Antisense; TGGCGAGCGCAACTTCGTTGTCAAG
>probe:Drosophila_2:1627910_s_at:629:465; Interrogation_Position=2100; Antisense; GTTGTCAAGCACTTGTACGTGCCCA
>probe:Drosophila_2:1627910_s_at:368:539; Interrogation_Position=2150; Antisense; GGTACTCATCGATATGTTCGGCATC
>probe:Drosophila_2:1627910_s_at:359:495; Interrogation_Position=2190; Antisense; GTCAACGCCGTTAACGAGATCCTCA
>probe:Drosophila_2:1627910_s_at:343:267; Interrogation_Position=2228; Antisense; CAGTCGTGATCTGGCTACATTCATT
>probe:Drosophila_2:1627910_s_at:574:667; Interrogation_Position=2243; Antisense; TACATTCATTTACCGCCTACAGGAA
>probe:Drosophila_2:1627910_s_at:590:717; Interrogation_Position=2288; Antisense; TTCCAATATTACCATTCCCTCTAAG

Paste this into a BLAST search page for me
GGTGGTGCGCCAAAAGAGCTCCGACAAGAGCTCCGACGAGGTGCTTCTGAATCGGAGCTGGAATCACTTTGTACGAGAAGAACTGCATCACCGTCCGTGTTGTGATCGATCCGTTCACCGTGAAGTGAAGCCATTGGACGCCGAGCTGATTGAAGCTGTGCTGAGTGCCCTGGCTTGGCGAGCGCAACTTCGTTGTCAAGGTTGTCAAGCACTTGTACGTGCCCAGGTACTCATCGATATGTTCGGCATCGTCAACGCCGTTAACGAGATCCTCACAGTCGTGATCTGGCTACATTCATTTACATTCATTTACCGCCTACAGGAATTCCAATATTACCATTCCCTCTAAG

Full Affymetrix probeset data:

Annotations for 1627910_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720