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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627964_s_at:

>probe:Drosophila_2:1627964_s_at:285:727; Interrogation_Position=1496; Antisense; TTGGGTTTGGCATTCCCGGCACTCA
>probe:Drosophila_2:1627964_s_at:528:97; Interrogation_Position=1524; Antisense; AGATCTGCACACATTGGTACAATAC
>probe:Drosophila_2:1627964_s_at:678:539; Interrogation_Position=1553; Antisense; GGTTTCGCAAAAGTCTGGCTGGTGT
>probe:Drosophila_2:1627964_s_at:605:621; Interrogation_Position=1590; Antisense; TGCTGATCATTGTGGGCATCCTGGG
>probe:Drosophila_2:1627964_s_at:656:285; Interrogation_Position=1610; Antisense; CTGGGCTTGGTAATCGGCACGTATA
>probe:Drosophila_2:1627964_s_at:618:563; Interrogation_Position=1625; Antisense; GGCACGTATACCTCACTCAAGGAGA
>probe:Drosophila_2:1627964_s_at:347:543; Interrogation_Position=1645; Antisense; GGAGATCGTACTAACCTTTTCGGAG
>probe:Drosophila_2:1627964_s_at:510:225; Interrogation_Position=1684; Antisense; AAGGACGTAAATCCGCCAGCGGGCA
>probe:Drosophila_2:1627964_s_at:526:261; Interrogation_Position=1700; Antisense; CAGCGGGCATTCCAATTCAAGCGAA
>probe:Drosophila_2:1627964_s_at:291:11; Interrogation_Position=1764; Antisense; ATTCGCAGCGCAGCACAAATGACAA
>probe:Drosophila_2:1627964_s_at:142:335; Interrogation_Position=1830; Antisense; GCTGAGATCCGCTGTACGTGTGTAA
>probe:Drosophila_2:1627964_s_at:548:513; Interrogation_Position=1906; Antisense; GTGATATTTTTAGCGTCATGCCCAA
>probe:Drosophila_2:1627964_s_at:560:121; Interrogation_Position=1917; Antisense; AGCGTCATGCCCAAGAATCTGTACA
>probe:Drosophila_2:1627964_s_at:27:511; Interrogation_Position=2003; Antisense; GTGCACAGTCACATCCTTTTAAGTC

Paste this into a BLAST search page for me
TTGGGTTTGGCATTCCCGGCACTCAAGATCTGCACACATTGGTACAATACGGTTTCGCAAAAGTCTGGCTGGTGTTGCTGATCATTGTGGGCATCCTGGGCTGGGCTTGGTAATCGGCACGTATAGGCACGTATACCTCACTCAAGGAGAGGAGATCGTACTAACCTTTTCGGAGAAGGACGTAAATCCGCCAGCGGGCACAGCGGGCATTCCAATTCAAGCGAAATTCGCAGCGCAGCACAAATGACAAGCTGAGATCCGCTGTACGTGTGTAAGTGATATTTTTAGCGTCATGCCCAAAGCGTCATGCCCAAGAATCTGTACAGTGCACAGTCACATCCTTTTAAGTC

Full Affymetrix probeset data:

Annotations for 1627964_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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