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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1627966_s_at:

>probe:Drosophila_2:1627966_s_at:49:629; Interrogation_Position=2163; Antisense; TCCAAAGATTTCATGCCGACACAAT
>probe:Drosophila_2:1627966_s_at:103:229; Interrogation_Position=2185; Antisense; AATGGCATCATGACCGCGAGATTCA
>probe:Drosophila_2:1627966_s_at:319:327; Interrogation_Position=2200; Antisense; GCGAGATTCACTCACCCTAAATTAT
>probe:Drosophila_2:1627966_s_at:170:245; Interrogation_Position=2219; Antisense; AATTATGTGTACATTCGCCACCTAC
>probe:Drosophila_2:1627966_s_at:67:131; Interrogation_Position=2238; Antisense; ACCTACCGCTGTGTATTAGCCGAAT
>probe:Drosophila_2:1627966_s_at:199:295; Interrogation_Position=2258; Antisense; CGAATAGAACCGTGGCTCGAAATTT
>probe:Drosophila_2:1627966_s_at:440:229; Interrogation_Position=2421; Antisense; AATGTATACACACACGGAACCCTCG
>probe:Drosophila_2:1627966_s_at:109:379; Interrogation_Position=2437; Antisense; GAACCCTCGGTAGAGATCGTTTGCA
>probe:Drosophila_2:1627966_s_at:154:81; Interrogation_Position=2476; Antisense; AGGGAGACTATGTTCCATTTTCGGG
>probe:Drosophila_2:1627966_s_at:375:43; Interrogation_Position=2516; Antisense; ATCCCGGTGCATTTCACTTGTTTTA
>probe:Drosophila_2:1627966_s_at:309:353; Interrogation_Position=2546; Antisense; GCAGCATGATGCTCACACATTCGAT
>probe:Drosophila_2:1627966_s_at:543:457; Interrogation_Position=2568; Antisense; GATATCTACTCGACGACATTCAGTG
>probe:Drosophila_2:1627966_s_at:39:533; Interrogation_Position=2599; Antisense; GGGTCCAGGCAATTTCAACTGAATT
>probe:Drosophila_2:1627966_s_at:121:391; Interrogation_Position=2630; Antisense; GAAACCTTTTAGTTCTGTCACTTAT

Paste this into a BLAST search page for me
TCCAAAGATTTCATGCCGACACAATAATGGCATCATGACCGCGAGATTCAGCGAGATTCACTCACCCTAAATTATAATTATGTGTACATTCGCCACCTACACCTACCGCTGTGTATTAGCCGAATCGAATAGAACCGTGGCTCGAAATTTAATGTATACACACACGGAACCCTCGGAACCCTCGGTAGAGATCGTTTGCAAGGGAGACTATGTTCCATTTTCGGGATCCCGGTGCATTTCACTTGTTTTAGCAGCATGATGCTCACACATTCGATGATATCTACTCGACGACATTCAGTGGGGTCCAGGCAATTTCAACTGAATTGAAACCTTTTAGTTCTGTCACTTAT

Full Affymetrix probeset data:

Annotations for 1627966_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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