FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628008_a_at:

>probe:Drosophila_2:1628008_a_at:318:557; Interrogation_Position=2437; Antisense; GGACAGAACTTCAGATTCCCCGGTC
>probe:Drosophila_2:1628008_a_at:516:565; Interrogation_Position=2467; Antisense; GGCAACACCTCAGGATCTGGTAACA
>probe:Drosophila_2:1628008_a_at:62:491; Interrogation_Position=2486; Antisense; GTAACAACTTGCCAGTTAACTCGCC
>probe:Drosophila_2:1628008_a_at:56:577; Interrogation_Position=2512; Antisense; GGCGACAACGGCGACGATGATCTTT
>probe:Drosophila_2:1628008_a_at:623:475; Interrogation_Position=2540; Antisense; GTTAGATTTCTAGTTTTACACCGCA
>probe:Drosophila_2:1628008_a_at:189:175; Interrogation_Position=2624; Antisense; AAACCAATCACATTCGCATCCTGGA
>probe:Drosophila_2:1628008_a_at:560:45; Interrogation_Position=2641; Antisense; ATCCTGGACGCGGTAACTTACTACA
>probe:Drosophila_2:1628008_a_at:450:339; Interrogation_Position=2676; Antisense; GCTAAGACATCCAGCCGATGGCGAA
>probe:Drosophila_2:1628008_a_at:77:403; Interrogation_Position=2708; Antisense; GACATACCCGATTCAATATTCACTT
>probe:Drosophila_2:1628008_a_at:153:709; Interrogation_Position=2726; Antisense; TTCACTTCTTTGATACCATCCTTAC
>probe:Drosophila_2:1628008_a_at:203:645; Interrogation_Position=2751; Antisense; TCTTGGTCGCGGATACGTGCAGTAG
>probe:Drosophila_2:1628008_a_at:662:305; Interrogation_Position=2786; Antisense; CCATTTGGATTTGGGCTCGCCTAAT
>probe:Drosophila_2:1628008_a_at:80:711; Interrogation_Position=2822; Antisense; TTAATTGGCGAACTATTCCGCGCCT
>probe:Drosophila_2:1628008_a_at:319:147; Interrogation_Position=2850; Antisense; ACTAATCATTCGTGCATTGTCGGTA

Paste this into a BLAST search page for me
GGACAGAACTTCAGATTCCCCGGTCGGCAACACCTCAGGATCTGGTAACAGTAACAACTTGCCAGTTAACTCGCCGGCGACAACGGCGACGATGATCTTTGTTAGATTTCTAGTTTTACACCGCAAAACCAATCACATTCGCATCCTGGAATCCTGGACGCGGTAACTTACTACAGCTAAGACATCCAGCCGATGGCGAAGACATACCCGATTCAATATTCACTTTTCACTTCTTTGATACCATCCTTACTCTTGGTCGCGGATACGTGCAGTAGCCATTTGGATTTGGGCTCGCCTAATTTAATTGGCGAACTATTCCGCGCCTACTAATCATTCGTGCATTGTCGGTA

Full Affymetrix probeset data:

Annotations for 1628008_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720