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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628067_s_at:

>probe:Drosophila_2:1628067_s_at:275:329; Interrogation_Position=2332; Antisense; GCGTCACTTCGATCGCAAGGGAGCG
>probe:Drosophila_2:1628067_s_at:66:121; Interrogation_Position=2353; Antisense; AGCGGGCATGGCCTATGTGAACTAA
>probe:Drosophila_2:1628067_s_at:238:165; Interrogation_Position=2385; Antisense; AAATCGGGCCAGAGGACCGGACCAT
>probe:Drosophila_2:1628067_s_at:676:187; Interrogation_Position=2420; Antisense; AACAGCGACCGATCGGCGTGAACAG
>probe:Drosophila_2:1628067_s_at:582:35; Interrogation_Position=2453; Antisense; ATCAGTTTTATGTGCACTTCAGAAA
>probe:Drosophila_2:1628067_s_at:122:107; Interrogation_Position=2473; Antisense; AGAAACACTCATTCCAAACCCATTC
>probe:Drosophila_2:1628067_s_at:151:17; Interrogation_Position=2540; Antisense; ATTTATTGAGATCCCACAATCCGCC
>probe:Drosophila_2:1628067_s_at:142:47; Interrogation_Position=2558; Antisense; ATCCGCCACTTTCAAATGGTTTCCT
>probe:Drosophila_2:1628067_s_at:29:579; Interrogation_Position=2574; Antisense; TGGTTTCCTACTTTACCACTACGCT
>probe:Drosophila_2:1628067_s_at:215:147; Interrogation_Position=2591; Antisense; ACTACGCTCTATCCTTCATATGTTT
>probe:Drosophila_2:1628067_s_at:444:305; Interrogation_Position=2603; Antisense; CCTTCATATGTTTCCCTAGTTTTAG
>probe:Drosophila_2:1628067_s_at:199:525; Interrogation_Position=2657; Antisense; TAAGTTTCAGTTATACCTACGCGGG
>probe:Drosophila_2:1628067_s_at:341:279; Interrogation_Position=2673; Antisense; CTACGCGGGATTTGAGGCCATCTGA
>probe:Drosophila_2:1628067_s_at:210:381; Interrogation_Position=2696; Antisense; GAACGAACAGATTAGCCTCGAATGT

Paste this into a BLAST search page for me
GCGTCACTTCGATCGCAAGGGAGCGAGCGGGCATGGCCTATGTGAACTAAAAATCGGGCCAGAGGACCGGACCATAACAGCGACCGATCGGCGTGAACAGATCAGTTTTATGTGCACTTCAGAAAAGAAACACTCATTCCAAACCCATTCATTTATTGAGATCCCACAATCCGCCATCCGCCACTTTCAAATGGTTTCCTTGGTTTCCTACTTTACCACTACGCTACTACGCTCTATCCTTCATATGTTTCCTTCATATGTTTCCCTAGTTTTAGTAAGTTTCAGTTATACCTACGCGGGCTACGCGGGATTTGAGGCCATCTGAGAACGAACAGATTAGCCTCGAATGT

Full Affymetrix probeset data:

Annotations for 1628067_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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