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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628081_s_at:

>probe:Drosophila_2:1628081_s_at:693:251; Interrogation_Position=1797; Antisense; CAAGATTCCGGAGCGCTGGTTCACC
>probe:Drosophila_2:1628081_s_at:398:359; Interrogation_Position=1823; Antisense; GCAAGGTGGACTTCGTTGGGCATTC
>probe:Drosophila_2:1628081_s_at:274:729; Interrogation_Position=1838; Antisense; TTGGGCATTCGCACAACTGGTGGCA
>probe:Drosophila_2:1628081_s_at:642:195; Interrogation_Position=1852; Antisense; AACTGGTGGCACCTGATCATCGTGG
>probe:Drosophila_2:1628081_s_at:659:685; Interrogation_Position=1885; Antisense; TATCACTGGCACAACACCGGACTGG
>probe:Drosophila_2:1628081_s_at:537:591; Interrogation_Position=1907; Antisense; TGGTCTATGCCGAGTATCGCCTGAA
>probe:Drosophila_2:1628081_s_at:469:45; Interrogation_Position=1922; Antisense; ATCGCCTGAATAACGGATGCACTGC
>probe:Drosophila_2:1628081_s_at:380:563; Interrogation_Position=2017; Antisense; GGAATCCGGGACTCTAGTAGACTAA
>probe:Drosophila_2:1628081_s_at:375:575; Interrogation_Position=2065; Antisense; GGCGCTCTTTATCCGCTAATAACTA
>probe:Drosophila_2:1628081_s_at:251:531; Interrogation_Position=2150; Antisense; GGGTTTCGTGTTAGACAATCCAGAT
>probe:Drosophila_2:1628081_s_at:92:449; Interrogation_Position=2172; Antisense; GATCCAGATAGTTGGCATCGCATAA
>probe:Drosophila_2:1628081_s_at:508:29; Interrogation_Position=2193; Antisense; ATAAGCGGCAAAAAGGTTTCTCTCT
>probe:Drosophila_2:1628081_s_at:441:539; Interrogation_Position=2207; Antisense; GGTTTCTCTCTTTATATCCTAATTG
>probe:Drosophila_2:1628081_s_at:131:397; Interrogation_Position=2267; Antisense; GAAATTGCATGTGTCTTGAGCTGAA

Paste this into a BLAST search page for me
CAAGATTCCGGAGCGCTGGTTCACCGCAAGGTGGACTTCGTTGGGCATTCTTGGGCATTCGCACAACTGGTGGCAAACTGGTGGCACCTGATCATCGTGGTATCACTGGCACAACACCGGACTGGTGGTCTATGCCGAGTATCGCCTGAAATCGCCTGAATAACGGATGCACTGCGGAATCCGGGACTCTAGTAGACTAAGGCGCTCTTTATCCGCTAATAACTAGGGTTTCGTGTTAGACAATCCAGATGATCCAGATAGTTGGCATCGCATAAATAAGCGGCAAAAAGGTTTCTCTCTGGTTTCTCTCTTTATATCCTAATTGGAAATTGCATGTGTCTTGAGCTGAA

Full Affymetrix probeset data:

Annotations for 1628081_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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