FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628129_a_at:

>probe:Drosophila_2:1628129_a_at:44:421; Interrogation_Position=2107; Antisense; GAGAGTCGGTACCACTTTTGCTAAT
>probe:Drosophila_2:1628129_a_at:582:717; Interrogation_Position=2124; Antisense; TTGCTAATCTTACAGGAGCGACCTT
>probe:Drosophila_2:1628129_a_at:497:69; Interrogation_Position=2137; Antisense; AGGAGCGACCTTGAATGAAATTTAA
>probe:Drosophila_2:1628129_a_at:700:691; Interrogation_Position=2170; Antisense; TTTGTATCTTTTGTGATCCCGCTAC
>probe:Drosophila_2:1628129_a_at:370:45; Interrogation_Position=2185; Antisense; ATCCCGCTACTGTGTATAGCCCAGA
>probe:Drosophila_2:1628129_a_at:571:177; Interrogation_Position=2215; Antisense; AAACTTAACCGCAGTCCAAGTGCTC
>probe:Drosophila_2:1628129_a_at:25:711; Interrogation_Position=2284; Antisense; TTCTCTAGATGACCACAGTAACTGT
>probe:Drosophila_2:1628129_a_at:455:385; Interrogation_Position=2385; Antisense; GAACTTGAAGTTTATCTACCCGCAT
>probe:Drosophila_2:1628129_a_at:634:711; Interrogation_Position=2451; Antisense; TTCATTCCATAGCTATTTTCCCAGT
>probe:Drosophila_2:1628129_a_at:268:249; Interrogation_Position=2496; Antisense; CAACCAAATTGGCTATTCCGACTCC
>probe:Drosophila_2:1628129_a_at:634:249; Interrogation_Position=2514; Antisense; CGACTCCCCGGAAATTTGATTGGTG
>probe:Drosophila_2:1628129_a_at:189:531; Interrogation_Position=2535; Antisense; GGTGGTGGTAACTGAACTGCAAATA
>probe:Drosophila_2:1628129_a_at:652:477; Interrogation_Position=2612; Antisense; GTTTATTGTTTATTCGACTGTCGGG
>probe:Drosophila_2:1628129_a_at:186:407; Interrogation_Position=2627; Antisense; GACTGTCGGGCAGGCTGAAAGCAAC

Paste this into a BLAST search page for me
GAGAGTCGGTACCACTTTTGCTAATTTGCTAATCTTACAGGAGCGACCTTAGGAGCGACCTTGAATGAAATTTAATTTGTATCTTTTGTGATCCCGCTACATCCCGCTACTGTGTATAGCCCAGAAAACTTAACCGCAGTCCAAGTGCTCTTCTCTAGATGACCACAGTAACTGTGAACTTGAAGTTTATCTACCCGCATTTCATTCCATAGCTATTTTCCCAGTCAACCAAATTGGCTATTCCGACTCCCGACTCCCCGGAAATTTGATTGGTGGGTGGTGGTAACTGAACTGCAAATAGTTTATTGTTTATTCGACTGTCGGGGACTGTCGGGCAGGCTGAAAGCAAC

Full Affymetrix probeset data:

Annotations for 1628129_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720