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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628189_at:

>probe:Drosophila_2:1628189_at:114:383; Interrogation_Position=4699; Antisense; GAACGGAAATACCTATGCATAACAT
>probe:Drosophila_2:1628189_at:296:475; Interrogation_Position=4725; Antisense; GTTATAAGACGGGAACTCGCAATAT
>probe:Drosophila_2:1628189_at:556:561; Interrogation_Position=4736; Antisense; GGAACTCGCAATATGATGGTAACTC
>probe:Drosophila_2:1628189_at:452:661; Interrogation_Position=4755; Antisense; TAACTCAACTTCAAAACCGATACAG
>probe:Drosophila_2:1628189_at:469:131; Interrogation_Position=4770; Antisense; ACCGATACAGACTTCTTCAGCTGAC
>probe:Drosophila_2:1628189_at:428:403; Interrogation_Position=4779; Antisense; GACTTCTTCAGCTGACTTCCATAAT
>probe:Drosophila_2:1628189_at:366:427; Interrogation_Position=4829; Antisense; TAGAGGATAACGCTTTAAACGAACA
>probe:Drosophila_2:1628189_at:549:147; Interrogation_Position=4861; Antisense; ACTTACATACACGAACCTTGGTTGC
>probe:Drosophila_2:1628189_at:472:307; Interrogation_Position=4876; Antisense; CCTTGGTTGCGGTTGAGTTAGTAAT
>probe:Drosophila_2:1628189_at:705:655; Interrogation_Position=4900; Antisense; TAACCTATAGGTTCTGTTCCAGTTC
>probe:Drosophila_2:1628189_at:403:639; Interrogation_Position=5007; Antisense; TCGTCGTCACACACTCTGTGTAAAT
>probe:Drosophila_2:1628189_at:212:255; Interrogation_Position=5066; Antisense; CAACACGAATGTAAGACATCCCCAG
>probe:Drosophila_2:1628189_at:374:281; Interrogation_Position=5130; Antisense; CTCATAGAGCGCGAGTCGAGGCAGA
>probe:Drosophila_2:1628189_at:696:445; Interrogation_Position=5156; Antisense; GATGCAACATCATGCGTTACATTGT

Paste this into a BLAST search page for me
GAACGGAAATACCTATGCATAACATGTTATAAGACGGGAACTCGCAATATGGAACTCGCAATATGATGGTAACTCTAACTCAACTTCAAAACCGATACAGACCGATACAGACTTCTTCAGCTGACGACTTCTTCAGCTGACTTCCATAATTAGAGGATAACGCTTTAAACGAACAACTTACATACACGAACCTTGGTTGCCCTTGGTTGCGGTTGAGTTAGTAATTAACCTATAGGTTCTGTTCCAGTTCTCGTCGTCACACACTCTGTGTAAATCAACACGAATGTAAGACATCCCCAGCTCATAGAGCGCGAGTCGAGGCAGAGATGCAACATCATGCGTTACATTGT

Full Affymetrix probeset data:

Annotations for 1628189_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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