FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628215_s_at:

>probe:Drosophila_2:1628215_s_at:337:709; Interrogation_Position=5044; Antisense; TTAAACAGTGTTTGTATGCCACAAG
>probe:Drosophila_2:1628215_s_at:19:683; Interrogation_Position=5058; Antisense; TATGCCACAAGGGAAAACAGCCAGC
>probe:Drosophila_2:1628215_s_at:93:3; Interrogation_Position=5067; Antisense; AGGGAAAACAGCCAGCAACAAAAAG
>probe:Drosophila_2:1628215_s_at:476:493; Interrogation_Position=5216; Antisense; GTAATTAAAAACGACAACATGCATA
>probe:Drosophila_2:1628215_s_at:575:707; Interrogation_Position=5253; Antisense; TTGCAAGTTGCATATATATACATTT
>probe:Drosophila_2:1628215_s_at:621:161; Interrogation_Position=5303; Antisense; ACAATTATTAAATAGCAGCAGCCAC
>probe:Drosophila_2:1628215_s_at:387:393; Interrogation_Position=5376; Antisense; GAAAGCATTCTATATGTCGGTGAGA
>probe:Drosophila_2:1628215_s_at:321:61; Interrogation_Position=5389; Antisense; ATGTCGGTGAGATTTCTAAGCGCTA
>probe:Drosophila_2:1628215_s_at:146:609; Interrogation_Position=5396; Antisense; TGAGATTTCTAAGCGCTAGGCCGAA
>probe:Drosophila_2:1628215_s_at:211:205; Interrogation_Position=5406; Antisense; AAGCGCTAGGCCGAAATACAAAATT
>probe:Drosophila_2:1628215_s_at:278:153; Interrogation_Position=5488; Antisense; ACAGTGCGAATTAATTAAGCGTCAT
>probe:Drosophila_2:1628215_s_at:45:247; Interrogation_Position=5547; Antisense; AATTGTATTTATCTGTACCGAAGGC
>probe:Drosophila_2:1628215_s_at:693:703; Interrogation_Position=5555; Antisense; TTATCTGTACCGAAGGCTAAACGTT
>probe:Drosophila_2:1628215_s_at:539:203; Interrogation_Position=5586; Antisense; AAGCCGTCAAAATTGCATTTGTAAA

Paste this into a BLAST search page for me
TTAAACAGTGTTTGTATGCCACAAGTATGCCACAAGGGAAAACAGCCAGCAGGGAAAACAGCCAGCAACAAAAAGGTAATTAAAAACGACAACATGCATATTGCAAGTTGCATATATATACATTTACAATTATTAAATAGCAGCAGCCACGAAAGCATTCTATATGTCGGTGAGAATGTCGGTGAGATTTCTAAGCGCTATGAGATTTCTAAGCGCTAGGCCGAAAAGCGCTAGGCCGAAATACAAAATTACAGTGCGAATTAATTAAGCGTCATAATTGTATTTATCTGTACCGAAGGCTTATCTGTACCGAAGGCTAAACGTTAAGCCGTCAAAATTGCATTTGTAAA

Full Affymetrix probeset data:

Annotations for 1628215_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720