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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628224_a_at:

>probe:Drosophila_2:1628224_a_at:339:27; Interrogation_Position=4024; Antisense; ATAACTACCATTATCCTTACACCTA
>probe:Drosophila_2:1628224_a_at:555:307; Interrogation_Position=4031; Antisense; CCATTATCCTTACACCTACTATTAT
>probe:Drosophila_2:1628224_a_at:166:685; Interrogation_Position=4053; Antisense; TATAGTTTAAACGTGGTCTGCGGTA
>probe:Drosophila_2:1628224_a_at:187:297; Interrogation_Position=4128; Antisense; CGCATTTTAATTGTTGGCCGTTTAT
>probe:Drosophila_2:1628224_a_at:220:579; Interrogation_Position=4143; Antisense; GGCCGTTTATGTTATTAATCGCTAT
>probe:Drosophila_2:1628224_a_at:192:237; Interrogation_Position=4159; Antisense; AATCGCTATTTTGCCGCTGAAACAC
>probe:Drosophila_2:1628224_a_at:516:415; Interrogation_Position=4212; Antisense; GAGCAGGTGGAATGCCCAACTTTAA
>probe:Drosophila_2:1628224_a_at:59:107; Interrogation_Position=4266; Antisense; AGAAATATTGCTGCAGGCTGCCCTA
>probe:Drosophila_2:1628224_a_at:2:717; Interrogation_Position=4378; Antisense; TTCGCTTGGGAAAAAACACTGTGAT
>probe:Drosophila_2:1628224_a_at:399:187; Interrogation_Position=4392; Antisense; AACACTGTGATTTAGTATGCTAGTT
>probe:Drosophila_2:1628224_a_at:317:83; Interrogation_Position=4445; Antisense; AGTGGATTGTGCTTGTCCGATGAAT
>probe:Drosophila_2:1628224_a_at:728:343; Interrogation_Position=4455; Antisense; GCTTGTCCGATGAATTGTATAGCCA
>probe:Drosophila_2:1628224_a_at:1:33; Interrogation_Position=4512; Antisense; ATCAGAATGTTTGAGCCTACGGCAT
>probe:Drosophila_2:1628224_a_at:171:415; Interrogation_Position=4524; Antisense; GAGCCTACGGCATAAATCGTATTTT

Paste this into a BLAST search page for me
ATAACTACCATTATCCTTACACCTACCATTATCCTTACACCTACTATTATTATAGTTTAAACGTGGTCTGCGGTACGCATTTTAATTGTTGGCCGTTTATGGCCGTTTATGTTATTAATCGCTATAATCGCTATTTTGCCGCTGAAACACGAGCAGGTGGAATGCCCAACTTTAAAGAAATATTGCTGCAGGCTGCCCTATTCGCTTGGGAAAAAACACTGTGATAACACTGTGATTTAGTATGCTAGTTAGTGGATTGTGCTTGTCCGATGAATGCTTGTCCGATGAATTGTATAGCCAATCAGAATGTTTGAGCCTACGGCATGAGCCTACGGCATAAATCGTATTTT

Full Affymetrix probeset data:

Annotations for 1628224_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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