FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628237_s_at:

>probe:Drosophila_2:1628237_s_at:676:9; Interrogation_Position=1649; Antisense; ATTCCGAACTTCGATGAATCCCTCG
>probe:Drosophila_2:1628237_s_at:436:615; Interrogation_Position=1663; Antisense; TGAATCCCTCGCTAATGTGACCAAG
>probe:Drosophila_2:1628237_s_at:699:247; Interrogation_Position=1689; Antisense; AATTGGCCAGTCTCTGGAGCTCTAA
>probe:Drosophila_2:1628237_s_at:75:455; Interrogation_Position=1744; Antisense; GATCAAGACGACCATTTCCATTCAC
>probe:Drosophila_2:1628237_s_at:530:117; Interrogation_Position=1770; Antisense; AGCTCATTGACTTCCTGGGCAAACT
>probe:Drosophila_2:1628237_s_at:140:143; Interrogation_Position=1843; Antisense; ACTGGAATCCACATACAACCTGAAG
>probe:Drosophila_2:1628237_s_at:251:293; Interrogation_Position=1882; Antisense; CGAGGTTCGCTTCCGATTGAATCGC
>probe:Drosophila_2:1628237_s_at:378:367; Interrogation_Position=1900; Antisense; GAATCGCTTGATTATCCGTGCACGC
>probe:Drosophila_2:1628237_s_at:93:445; Interrogation_Position=1940; Antisense; GATGAGATCCTCGAATTTGCCAACT
>probe:Drosophila_2:1628237_s_at:410:37; Interrogation_Position=1994; Antisense; ATCTACCGCGATCTGGCTGGTTGGC
>probe:Drosophila_2:1628237_s_at:496:275; Interrogation_Position=2037; Antisense; CTATTCGCAACTTCGTCAACGTCAA
>probe:Drosophila_2:1628237_s_at:640:77; Interrogation_Position=2061; Antisense; AGGATCAGATGATGGCCGTCTGCTC
>probe:Drosophila_2:1628237_s_at:240:319; Interrogation_Position=2075; Antisense; GCCGTCTGCTCGCATACAATTGAAA
>probe:Drosophila_2:1628237_s_at:455:203; Interrogation_Position=2124; Antisense; AAGCCTGTTGCATGCATTTCCGAAG

Paste this into a BLAST search page for me
ATTCCGAACTTCGATGAATCCCTCGTGAATCCCTCGCTAATGTGACCAAGAATTGGCCAGTCTCTGGAGCTCTAAGATCAAGACGACCATTTCCATTCACAGCTCATTGACTTCCTGGGCAAACTACTGGAATCCACATACAACCTGAAGCGAGGTTCGCTTCCGATTGAATCGCGAATCGCTTGATTATCCGTGCACGCGATGAGATCCTCGAATTTGCCAACTATCTACCGCGATCTGGCTGGTTGGCCTATTCGCAACTTCGTCAACGTCAAAGGATCAGATGATGGCCGTCTGCTCGCCGTCTGCTCGCATACAATTGAAAAAGCCTGTTGCATGCATTTCCGAAG

Full Affymetrix probeset data:

Annotations for 1628237_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720