FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628285_a_at:

>probe:Drosophila_2:1628285_a_at:177:65; Interrogation_Position=2270; Antisense; ATGGTTGGCCTGCTGACGTTCATTC
>probe:Drosophila_2:1628285_a_at:663:469; Interrogation_Position=2287; Antisense; GTTCATTCGGGCTGCAGAAACGGAT
>probe:Drosophila_2:1628285_a_at:641:235; Interrogation_Position=2315; Antisense; AATCTGGTGACGCTCTCCTTGGGTA
>probe:Drosophila_2:1628285_a_at:339:545; Interrogation_Position=2341; Antisense; GGATCTCACGGGTTTAGGCCTGAAC
>probe:Drosophila_2:1628285_a_at:327:699; Interrogation_Position=2353; Antisense; TTTAGGCCTGAACCTGAACTCGCAG
>probe:Drosophila_2:1628285_a_at:597:425; Interrogation_Position=2378; Antisense; GAGAGCTTGCATACAACCTTCGCTG
>probe:Drosophila_2:1628285_a_at:81:125; Interrogation_Position=2418; Antisense; AGCCCTGCAGAGCACAAGACGTTGA
>probe:Drosophila_2:1628285_a_at:710:139; Interrogation_Position=2448; Antisense; ACGTGCCACCCGAATATCTGATTAA
>probe:Drosophila_2:1628285_a_at:226:413; Interrogation_Position=2484; Antisense; GAGACAAACTAACAGCGCCGGTACT
>probe:Drosophila_2:1628285_a_at:495:333; Interrogation_Position=2515; Antisense; GCTGCAAGAAGACCTGCTCTTTTTC
>probe:Drosophila_2:1628285_a_at:618:455; Interrogation_Position=2635; Antisense; GATAACTCGAATTCCTGGCATTGAT
>probe:Drosophila_2:1628285_a_at:288:591; Interrogation_Position=2674; Antisense; TGGTACAAAAGAGCGCGGCACCTTC
>probe:Drosophila_2:1628285_a_at:280:261; Interrogation_Position=2692; Antisense; CACCTTCTACTACTTTGATGCGCAA
>probe:Drosophila_2:1628285_a_at:197:249; Interrogation_Position=2734; Antisense; CAAGGTTTTCCAAATAGATCCCGAG

Paste this into a BLAST search page for me
ATGGTTGGCCTGCTGACGTTCATTCGTTCATTCGGGCTGCAGAAACGGATAATCTGGTGACGCTCTCCTTGGGTAGGATCTCACGGGTTTAGGCCTGAACTTTAGGCCTGAACCTGAACTCGCAGGAGAGCTTGCATACAACCTTCGCTGAGCCCTGCAGAGCACAAGACGTTGAACGTGCCACCCGAATATCTGATTAAGAGACAAACTAACAGCGCCGGTACTGCTGCAAGAAGACCTGCTCTTTTTCGATAACTCGAATTCCTGGCATTGATTGGTACAAAAGAGCGCGGCACCTTCCACCTTCTACTACTTTGATGCGCAACAAGGTTTTCCAAATAGATCCCGAG

Full Affymetrix probeset data:

Annotations for 1628285_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720