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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628342_s_at:

>probe:Drosophila_2:1628342_s_at:66:123; Interrogation_Position=1440; Antisense; AGCGAGTCGCAGATAGTTCACCACC
>probe:Drosophila_2:1628342_s_at:493:377; Interrogation_Position=1471; Antisense; GAAGCGCGTTAAGACTGAGCCCAAG
>probe:Drosophila_2:1628342_s_at:262:609; Interrogation_Position=1486; Antisense; TGAGCCCAAGTCAACACCCAGGGAG
>probe:Drosophila_2:1628342_s_at:127:291; Interrogation_Position=1595; Antisense; CGTACTCCCAATGCCAAGATCAATT
>probe:Drosophila_2:1628342_s_at:427:213; Interrogation_Position=1610; Antisense; AAGATCAATTTCAGCCCGTCTATTT
>probe:Drosophila_2:1628342_s_at:140:155; Interrogation_Position=1687; Antisense; ACAGCCGCGTTCCAAGAAGACCTAT
>probe:Drosophila_2:1628342_s_at:630:55; Interrogation_Position=1710; Antisense; ATGAGTTTAACTTCGAGCTCGACGT
>probe:Drosophila_2:1628342_s_at:91:337; Interrogation_Position=1726; Antisense; GCTCGACGTTAGCATGGATGCCAAC
>probe:Drosophila_2:1628342_s_at:153:67; Interrogation_Position=1794; Antisense; AGGCGACGGCGGTTGATTCACGTAC
>probe:Drosophila_2:1628342_s_at:617:261; Interrogation_Position=1831; Antisense; CAGCGCGTTGGCGTCCAGTTCGAAG
>probe:Drosophila_2:1628342_s_at:577:595; Interrogation_Position=1870; Antisense; TGTGACCCGAGTTAACCTGCGCAAG
>probe:Drosophila_2:1628342_s_at:377:223; Interrogation_Position=1892; Antisense; AAGGTAAACGGCCATGGCGACTCCT
>probe:Drosophila_2:1628342_s_at:265:157; Interrogation_Position=1940; Antisense; ACACCAGCCGTCACTGTGCGGAAAT
>probe:Drosophila_2:1628342_s_at:648:1; Interrogation_Position=1966; Antisense; CCAGGGATAGGAGCCTTTGTTTTCT

Paste this into a BLAST search page for me
AGCGAGTCGCAGATAGTTCACCACCGAAGCGCGTTAAGACTGAGCCCAAGTGAGCCCAAGTCAACACCCAGGGAGCGTACTCCCAATGCCAAGATCAATTAAGATCAATTTCAGCCCGTCTATTTACAGCCGCGTTCCAAGAAGACCTATATGAGTTTAACTTCGAGCTCGACGTGCTCGACGTTAGCATGGATGCCAACAGGCGACGGCGGTTGATTCACGTACCAGCGCGTTGGCGTCCAGTTCGAAGTGTGACCCGAGTTAACCTGCGCAAGAAGGTAAACGGCCATGGCGACTCCTACACCAGCCGTCACTGTGCGGAAATCCAGGGATAGGAGCCTTTGTTTTCT

Full Affymetrix probeset data:

Annotations for 1628342_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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