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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628390_at:

>probe:Drosophila_2:1628390_at:390:205; Interrogation_Position=1049; Antisense; AAGCGTTTTGCGTTTTCTGTATCCT
>probe:Drosophila_2:1628390_at:148:329; Interrogation_Position=1058; Antisense; GCGTTTTCTGTATCCTATTAATTAA
>probe:Drosophila_2:1628390_at:666:245; Interrogation_Position=1077; Antisense; AATTAATTGTGTTGCCTGTGTCCCA
>probe:Drosophila_2:1628390_at:192:287; Interrogation_Position=1092; Antisense; CTGTGTCCCATCATTCCAAAACATT
>probe:Drosophila_2:1628390_at:369:5; Interrogation_Position=1150; Antisense; ATTGAACGACATCACTAGCGAGGTG
>probe:Drosophila_2:1628390_at:625:107; Interrogation_Position=734; Antisense; AGAAGCTAGCTGATCGGGATTTCGA
>probe:Drosophila_2:1628390_at:74:531; Interrogation_Position=773; Antisense; GGGTGTGCCGTGAGAAAACAAGACT
>probe:Drosophila_2:1628390_at:587:565; Interrogation_Position=817; Antisense; GGCAAACCTAACCAAGAGAACATCG
>probe:Drosophila_2:1628390_at:258:423; Interrogation_Position=832; Antisense; GAGAACATCGGCAGGCAATCATAAA
>probe:Drosophila_2:1628390_at:241:37; Interrogation_Position=861; Antisense; ATCATGTGCAATTTCTGATTGTTCA
>probe:Drosophila_2:1628390_at:567:465; Interrogation_Position=877; Antisense; GATTGTTCAATAACCAACGCAAATG
>probe:Drosophila_2:1628390_at:289:235; Interrogation_Position=919; Antisense; AATCCGATTAGCTCTGATCTCTTTC
>probe:Drosophila_2:1628390_at:625:421; Interrogation_Position=946; Antisense; GAGCAATCCAAATTACTCGATCAGA
>probe:Drosophila_2:1628390_at:650:379; Interrogation_Position=973; Antisense; GAAGCCACCCAAAACAAGATCATTA

Paste this into a BLAST search page for me
AAGCGTTTTGCGTTTTCTGTATCCTGCGTTTTCTGTATCCTATTAATTAAAATTAATTGTGTTGCCTGTGTCCCACTGTGTCCCATCATTCCAAAACATTATTGAACGACATCACTAGCGAGGTGAGAAGCTAGCTGATCGGGATTTCGAGGGTGTGCCGTGAGAAAACAAGACTGGCAAACCTAACCAAGAGAACATCGGAGAACATCGGCAGGCAATCATAAAATCATGTGCAATTTCTGATTGTTCAGATTGTTCAATAACCAACGCAAATGAATCCGATTAGCTCTGATCTCTTTCGAGCAATCCAAATTACTCGATCAGAGAAGCCACCCAAAACAAGATCATTA

Full Affymetrix probeset data:

Annotations for 1628390_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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