FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628420_s_at:

>probe:Drosophila_2:1628420_s_at:40:261; Interrogation_Position=3935; Antisense; CACGGATTGCGTGGATCAGTGGCTA
>probe:Drosophila_2:1628420_s_at:278:521; Interrogation_Position=3953; Antisense; GTGGCTAGTCACCAACAAGCACTGC
>probe:Drosophila_2:1628420_s_at:17:725; Interrogation_Position=3983; Antisense; TTGTCGCGTCGACATCGAAACACAC
>probe:Drosophila_2:1628420_s_at:392:247; Interrogation_Position=4059; Antisense; AATTCCGCCGCATTATGACATTGTG
>probe:Drosophila_2:1628420_s_at:126:403; Interrogation_Position=4075; Antisense; GACATTGTGTGCACGGCATCTTTAT
>probe:Drosophila_2:1628420_s_at:372:569; Interrogation_Position=4089; Antisense; GGCATCTTTATGTAAATCCCTCAGA
>probe:Drosophila_2:1628420_s_at:97:281; Interrogation_Position=4108; Antisense; CTCAGACTGAGTTTGTTCTCGGCAT
>probe:Drosophila_2:1628420_s_at:29:473; Interrogation_Position=4122; Antisense; GTTCTCGGCATGCATCGATACAAGA
>probe:Drosophila_2:1628420_s_at:325:19; Interrogation_Position=4193; Antisense; ATGTTTAACCCACCGCAACGTATGT
>probe:Drosophila_2:1628420_s_at:560:621; Interrogation_Position=4238; Antisense; TGCTGCCGTGTTGCGCTGAAAGATA
>probe:Drosophila_2:1628420_s_at:365:479; Interrogation_Position=4279; Antisense; GTTTGGCTCAATTTCTATGTCTAAG
>probe:Drosophila_2:1628420_s_at:483:675; Interrogation_Position=4418; Antisense; TAGAATTCCCACGACGGGCGTATAT
>probe:Drosophila_2:1628420_s_at:453:575; Interrogation_Position=4434; Antisense; GGCGTATATGATAACTTTGACCCCA
>probe:Drosophila_2:1628420_s_at:724:689; Interrogation_Position=4449; Antisense; TTTGACCCCAGCTTGTTGTTATATT

Paste this into a BLAST search page for me
CACGGATTGCGTGGATCAGTGGCTAGTGGCTAGTCACCAACAAGCACTGCTTGTCGCGTCGACATCGAAACACACAATTCCGCCGCATTATGACATTGTGGACATTGTGTGCACGGCATCTTTATGGCATCTTTATGTAAATCCCTCAGACTCAGACTGAGTTTGTTCTCGGCATGTTCTCGGCATGCATCGATACAAGAATGTTTAACCCACCGCAACGTATGTTGCTGCCGTGTTGCGCTGAAAGATAGTTTGGCTCAATTTCTATGTCTAAGTAGAATTCCCACGACGGGCGTATATGGCGTATATGATAACTTTGACCCCATTTGACCCCAGCTTGTTGTTATATT

Full Affymetrix probeset data:

Annotations for 1628420_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720