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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1628487_s_at:

>probe:Drosophila_2:1628487_s_at:94:457; Interrogation_Position=1111; Antisense; GATACCCCACCCACAAAGAGAAGAT
>probe:Drosophila_2:1628487_s_at:314:529; Interrogation_Position=1149; Antisense; GGTGGACGGGCTGAAGTCATCTACA
>probe:Drosophila_2:1628487_s_at:437:155; Interrogation_Position=1171; Antisense; ACAGCTATGTGCAGCGACCTTTCAT
>probe:Drosophila_2:1628487_s_at:100:277; Interrogation_Position=1189; Antisense; CTTTCATCCACATGTCCTGGGAGAA
>probe:Drosophila_2:1628487_s_at:81:215; Interrogation_Position=1224; Antisense; AAGAGTCGCCATGTTGATTTCCAAT
>probe:Drosophila_2:1628487_s_at:181:449; Interrogation_Position=1293; Antisense; GATCCGCCACTGGAATTGGACGCAA
>probe:Drosophila_2:1628487_s_at:12:657; Interrogation_Position=1349; Antisense; TAATCCGCATCCCAATAACGCTGAG
>probe:Drosophila_2:1628487_s_at:341:117; Interrogation_Position=1403; Antisense; AGCTATAGGCGTGGCTGGTCCAGCA
>probe:Drosophila_2:1628487_s_at:81:505; Interrogation_Position=1420; Antisense; GTCCAGCAGTCGTGGTAGCCGTCGA
>probe:Drosophila_2:1628487_s_at:507:651; Interrogation_Position=1471; Antisense; TCAACGAGTTGGACCAGGCAGCGAT
>probe:Drosophila_2:1628487_s_at:239:123; Interrogation_Position=1490; Antisense; AGCGATCGCTGTTGCCGTCGGAATA
>probe:Drosophila_2:1628487_s_at:312:61; Interrogation_Position=1527; Antisense; ATGTAGATCAACTGACCGGCTGGTA
>probe:Drosophila_2:1628487_s_at:460:677; Interrogation_Position=1550; Antisense; TAGTCGGAACACACTGCCAGAGCAT
>probe:Drosophila_2:1628487_s_at:351:313; Interrogation_Position=1565; Antisense; GCCAGAGCATCACAGCGCACAGAAA

Paste this into a BLAST search page for me
GATACCCCACCCACAAAGAGAAGATGGTGGACGGGCTGAAGTCATCTACAACAGCTATGTGCAGCGACCTTTCATCTTTCATCCACATGTCCTGGGAGAAAAGAGTCGCCATGTTGATTTCCAATGATCCGCCACTGGAATTGGACGCAATAATCCGCATCCCAATAACGCTGAGAGCTATAGGCGTGGCTGGTCCAGCAGTCCAGCAGTCGTGGTAGCCGTCGATCAACGAGTTGGACCAGGCAGCGATAGCGATCGCTGTTGCCGTCGGAATAATGTAGATCAACTGACCGGCTGGTATAGTCGGAACACACTGCCAGAGCATGCCAGAGCATCACAGCGCACAGAAA

Full Affymetrix probeset data:

Annotations for 1628487_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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